RNA id: XR_005040128.1


Basic Information

Item Value
RNA id XR_005040128.1
length 2578
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC118944811
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39579694 ~ 39582551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGAGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACTGTAGGTATCTGTAGGTTAGGGGTTGTAGGTGAACAACAGACAACTAGTTGTTCTGTACGGAAACCTCAATGGTAGAAAAGACCTTGGTCTCTGTGTGTAAACAAGCAACTAAAGTTGAGGGTCATAGATGAACAATCGGTACCGACCAATTTAACAGTGAGGTCCTTTTTTTAAAGGAGAACCAGACACAAGGTTTGGCTGCGACATTTTGTTTGTAAAAGATAAATAAAATAGTTCTCTAGTTCTATAATGTAGTATTTGATGTGTCcttgcttcccccccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442628 lncRNA downstream 668 39577116 ~ 39579026 (-) False LOC110509137
TU2442654 lncRNA upstream 11374 39593857 ~ 39596743 (-) True G2136042
TU2442716 lncRNA upstream 40098 39622581 ~ 39622827 (-) True G2136097
TU2442640 lncRNA upstream 40509 39622992 ~ 39625417 (-) True G2136028
TU2442647 lncRNA upstream 43554 39626037 ~ 39626705 (-) True G2136035
TU2442717 lncRNA upstream 45287 39627770 ~ 39628147 (-) True G2136098
XM_036966895.1 mRNA downstream 877086 38685275 ~ 38702608 (-) True LOC118944870
XM_036966952.1 mRNA downstream 906473 38657804 ~ 38673221 (-) True LOC110509133
XM_036966299.1 mRNA downstream 934944 38574717 ~ 38644750 (-) True LOC110509132
XM_036966300.1 mRNA downstream 934945 38574717 ~ 38644749 (-) False LOC110509132
XM_036966304.1 mRNA downstream 942126 38574717 ~ 38637568 (-) False LOC110509132
XM_021590109.2 mRNA upstream 53980 39636463 ~ 39650352 (-) False rab31
XM_021590110.2 mRNA upstream 53980 39636463 ~ 39650366 (-) False rab31
XM_036966346.1 mRNA upstream 132145 39714628 ~ 39717684 (-) False LOC118944836
XM_036966757.1 mRNA upstream 137214 39719697 ~ 39763224 (-) False LOC110509148
XM_036966759.1 mRNA upstream 137214 39719697 ~ 39763224 (-) False LOC110509148
TU2442402 other downstream 573644 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1052774 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1449287 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1639851 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 3022241 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 221312 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 360670 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 408080 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 469156 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 832820 40415303 ~ 40415540 (-) True G2137086

Expression Profile