RNA id: TU2442624


Basic Information

Item Value
RNA id TU2442624
length 4990
lncRNA type sense_over
GC content 0.43
exon number 4
gene id rab31
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39633741 ~ 39650366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatagatagatagatagattctGGTTAAATCCGtttcgtgttttgtttccttgtcaCAATACTAACGAGTATCTTCATACTGGTATCGTCCTGGACCTAATCATCGTCCGCGTCTAATGTTAAATCACTGTTAAATCACTTGGTTATCTCATCATCTCTTAGTCCAACACTGTTGCATTTCCTGTTTTGTATTTTGAACTTagaatgtttttttctctctccaaacTAAAGCTAAGAGAGAGTTGGCTACATGCCTGGTAATGTACCATGAATATCTACAGGCGATACCAAACAGTTATAACTGAGTTATATAGACAAAGATGGTTATATAACACGATAATATCGGCCAATGAACCGCAACCGTTACCATTATTTGCGCTTTTGTGCAGATAGGAATTTACGCTGTTGATCTACTACCCACTGTAACTTAATGTGTCGTTGTGTTCCAGTTCCACTCGCTGGCCCCCATGTACTACCGAGGCTCTGCCGCCGCTGTCATTGTCTATGACATCACCAAACTGgacTCTTTCCAGACACTGAAGAAATGGGTGAAGGAGCTGAAAGAACATGGTCCGGAGGACATCGTTGTGGCCATCGCAGGGAACAAAAACGACTTGGGGGACATCCGGGAAGTTCCTATGAAAGAAGCTAAGGACTTTGCTGAGTCCATCGCAGCTATTTTCATGGAGACCAGCGCCAGAAACGCTGTCAATGTGGAGGAGCTCTTTCAGAAGATCAgTAAACAGATTCCGCCCCTGGAGAATCCAGACCTAGACAGTAACGAGTCCTTTAAGATAACCCGGCAGCCTCCTCCCTCTAACAAACGCTGCTGCTAGTAAGACCCCCTTTCTGAGTCCCAAATAGACCCCTACCACCCTACCCCCTACCACCCTACGCCCTAGGTATTTCATGTTGATCTCAAGGGGATTGGACTGGTGTAGTATGGTCGAATATGTTGGTAACTCTACCTGTCTTATCTCAAGGAAAGATGGCGGTATTATCGTGTTAACCACATTGTCTACACCTTATCCTATATTTTCAGATCGCTATGAAGTTGCTAGGCCCTAGGGGTAAGGGGCCAATGGGGTCGGTTTGGAATTCAGCATCCGATTGCCAGTGAGATTATCACGTCCTTTGTTTCCATTCCATACACAGTTCCATGGATCAAGTCTACACATCCATCCATCTTGACACACGGGTCACAATGTAGCGTTGGTGTACGCCACAGCTGCATAGTTCAGCTCCTGATTGGCCCTTTCGACAGTCCACAATGCATACACAGTACATGGGTGTCAcggagagaggaggacaacatGGCTTTGGCTTTGTGATCGATCAGAACCTCTCTCCCCTATAGGGAACAGAGTGTCCCAAGTCCAGAAAGCGCCCCTATAACCCATATAAAGCTAGTTGGACATTTCGCCATATTGTACCTATTCTACCTACCGGATATATCCAGGATGCATCACAACCGGgccgcgattgggagtcccatagggcggggcacaattggcccagcgtcgtccgggtttggccccgGTGTTAGGCccggcattgtaaataagaatgttgttctttaactgacttgcctaggtaaataaaggttacgTGTCAAATATACTCCTGTGCCTTGGTACggtgtgctgtaggtgtcatttCTGGATACAGAGAGGAAccagtgttttttgtttttagctgTAAACATGTTAATAAAATGAAGGAATACTATGGTACATAGTGGGCTATGTTTTCAGTTCATAGGCAGCAGCACAGAACAAACCAACAATGTCATCCTTTTAGaaatagagaaaaaaaaaaaaaaaaaaaatctaaattttaaatttagaatatatatatttttttcatttaacctttatttaactaggcaagtcagttaagaataaattcttatgtacaatgaaggcctaccggAAATTCAAAAACACGTTAATTAAAATAACTTGTGACTTGAGAGTACTTTCTGAATACGATTATGATATACGATATAGAGCTTATGAATTCTCATTCCCGAACAATGCAGTCAACAGATGTGTTGAtccattgtattgtattgtttcaCCGTTGTCCCAGTATTACAATGATAGGAGTTAATATCCATTGATTGCATGAGTTTGGTCTCGCCGACCGTTGTTGTCTTTTTTCCCCCCATTGAACACTTGTAAAttcaggagaaaaaaaaaaaagaaacgtccccttttcaggaccctgtctttcaaagataattagtaaaaatccaaataatttcacagatcttcattgtaaagggtttaaacactgtttcccatgcttgttcaatgaaccaaaaacaattaatgaacatgcacctgtggaacggtcgttaagacactaacagcttacagacggtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgactctgaaaaacatcaaaagaaagtTGCCCAGggcccctgctcatctgcgtaaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgcccGTACTgcgagatgcctaagacagcgctacagggagacaggacggacagctgatcgtcctcacagtggcagaccacatgtaacaacacctgcacaggattggtacatccgaacatcacatctgcgggacaggtacaggatggcaacaacaactgcccgagttacgcCAGAAACGCATaatccctctatcagtgctcagaatgtctgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacatcaacgGCAACAACggcgcctatgggcacaaacccaccatcgatggaccagacaggactagcaaaaagtgctcttcactgacgattggtggttttgtctcaccaggggtgatggttggtttatcgtcgaaggaatgagcgttacaccgaggcctgtactctggagcgggattgatttggaggtggagggtccgtcatggtgtggggtggtgtgtcacagcatcatcggactgagcttgttgtcattgcaggcaatgtcaacgctgtgcgttacagggaagacatccttctccctcatgtggtacccttcctgtgtGCTCATACTGACATGAccctcagcatgacaatgccaccagccatactgctcgttctgtgagtgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagcccggatctcaatggatcggagggtgaggtctagggccattccccccagaaatgtccgggaacttgcaggtgccttggtggaagagtgaggtaacatctcacagcaagaactgacaaatctggtgcagtccatgaggaggagatgcactgcagtgcttaatgcagctggtggccacaccagatactgactgttactttagatttattttgaccctccctttgttcagggaaacgttattccatttctgttagtcacatgtctgtggaacatgttcagtttatgtctcagtggttgaatcttgttatgttcatacacatatttacacgtgtttaagtttgctgaaaaatcAACGCaggtgacagtgagaggacgtttcttttttttgctgagtttatatgtacATGCCTGTATAGCACACATGTAGAATATGTATTTCTGAGAATGTACTGTATAAGATGTTCATAATGTATACGAAGGACTAGGTCGCATGAGCACATAAATGCATCCtagggcggcaggtatcctagcggttaagagcttttgggccagtaaccgaaaggtcgctggttcgaatccccaagcctaTTAGGtgtaaaaaatctgtcaatgtgcccttgcgCAAGGCACTGATTggtcctgtaagttgctctggataagagcgtctgttgAATGACTAAAAATGTCAAATCATTTGTAATGGTCATGTTAATTGACTGacattatctcatagaacaaaatgtagAAGAGCTCCTCAGCCTGTGTTAACCTCTGACCTTATTTTCGGCGTTTATTCCAGAACCCCATATAGAAATGCCCAACGAACCAGAGGTAGAAAATGCTAACACATTTCTGCTTTTATGACTACAAGCTGGCGCACTCTATAGGCCAGATaggcacatttttattttattaacctttatttaactaggcaagtcagtttaagaacaaattcttatttacaatgacggactaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgcaaccttccggttgctagtccaacgctctaaccactaggctaccctgccgccagattactgtgtctgtgtagaaAAACAGGGGACCCATAGGCTTTTGGATTTGACCGCTTGTATGTCATTTTATTTGTAGTTTGAGCACTTTTTAATGGAAAAAATGTTGATTCAGTATTAGGTTTTTGATGACTACATTCCTTTACGATTGCCCATCGAATTGCTACAGTGGATTGAAATGTACACCGGACTGAATGGGATATGGAGTTTACAGCAACACTGCAATGCCatattgtaaaaacaaatgttttctaCTTTGCAAGGTAGATTTAATATTGTTTTTTTACTATCAGGATTTTATACAATATTTTGAATTAGTCAGTGTACAGATATGAACCATGAGATGTTAACACACAATACTGTTCTGGACTCTTCTGTACAAGCTTGACCAATGTCCACGTGTGGCAACAGTCAATAATCTGATCAAACTAGATTTGCACATTTCTTGCCCTGAATGCCTGCCTACACAGTCCATTGTGCAATGTAAACAAAGTGGGTTTTTTGTGTTAGTTTTTCCCTCTGTAGACATAAATCGAATATGAAATGGTTTTATTATTTTCGTGTGCTTGACTGATGTTATACCCTTTTCCATATCCTATGCAGACCAGATTAACATTTGCTATATTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442717 lncRNA downstream 5594 39627770 ~ 39628147 (-) True G2136098
TU2442647 lncRNA downstream 7036 39626037 ~ 39626705 (-) True G2136035
TU2442640 lncRNA downstream 8324 39622992 ~ 39625417 (-) True G2136028
TU2442716 lncRNA downstream 10914 39622581 ~ 39622827 (-) True G2136097
TU2442654 lncRNA downstream 36998 39593857 ~ 39596743 (-) True G2136042
TU2442737 lncRNA upstream 10046 39651685 ~ 39702600 (-) False G2136103
TU2442739 lncRNA upstream 10046 39651685 ~ 39711217 (-) False G2136103
TU2442740 lncRNA upstream 10046 39651685 ~ 39713832 (-) False G2136103
TU2442747 lncRNA upstream 10046 39651685 ~ 39693748 (-) False G2136103
TU2442756 lncRNA upstream 10046 39651685 ~ 39710203 (-) False G2136103
XM_036965925.1 mRNA downstream 12649 39578217 ~ 39621092 (-) False LOC110509137
XR_005040126.1 mRNA downstream 51190 39579694 ~ 39582551 (-) True LOC118944811
XR_005040130.1 mRNA downstream 51204 39579694 ~ 39582537 (-) False LOC118944811
XR_005040127.1 mRNA downstream 51258 39579694 ~ 39582483 (-) False LOC118944811
XR_005040128.1 mRNA downstream 51258 39579694 ~ 39582483 (-) False LOC118944811
XM_036966346.1 mRNA upstream 72989 39714628 ~ 39717684 (-) False LOC118944836
XM_036966757.1 mRNA upstream 78058 39719697 ~ 39763224 (-) False LOC110509148
XM_036966759.1 mRNA upstream 78058 39719697 ~ 39763224 (-) False LOC110509148
XM_036966758.1 mRNA upstream 78058 39719697 ~ 39763225 (-) False LOC110509148
XM_036966455.1 mRNA upstream 136913 39778552 ~ 39829206 (-) False LOC110509145
TU2442402 other downstream 627691 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1106821 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1503334 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1693898 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 3076288 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 162156 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 301514 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 348924 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 410000 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 773664 40415303 ~ 40415540 (-) True G2137086

Expression Profile