RNA id: XM_036966346.1


Basic Information

Item Value
RNA id XM_036966346.1
length 2471
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC118944836
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39714554 ~ 39717684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGTACATTACCCGTTGTCCGTGTAGTTGGTCCTTTAGGAGGTGGGAATGTGACacaatatatccacaggaaaTTATAAATACGTGAACTTTTCAAAACCGCTGGTCGTGCGTTCAGATTTATAACACCTGAAGCGTGCTCAGAAGATACAAATACAAGACTACTGACCGAGCTGGTGCACCTCGTTCTGAGCACGTTTCAGGTCTAATGGGGAGGTGACGTATCACTgaccagaggagagaagagacccAGGACTCTGTGTCTAGAACAGTGCCCAATGCAGAGTGCCCAGCCATGACCGAATGCTTCCATCCCCCCAGGAGCAGCCCAGCGGCAGTACGTCGGGCGGAGCACCCAGGAGGGGTGGCTCGTACGCCCAGCTCGGAGGAGATCAGCCCCACCAAATTCCCCGGGCTGTACAGGACGGGCGAGCCTTCGTCCCCCCACGACGGACACCACCATCATGAGGTCATCGACGCCGTGTCAGATGAGGATTAAGAACATGGGAAGAAGAAGAACaagttcaagaagaagaagaatgagacaTTACCTTGTTACTGTTTATATCGAGTTACAGATTTGAATCATTTGGCAGTTGCTCTTATCAAGAGTGATTTACACTTAGTTCATTAATTTAAGTGACTTATACTTAGTTCATCCATCTTAATATGGCtactaggtgagacaaccacatgtcaCAATCATAGTAGTGATCGGACTGTACAGTCCGTACAGTTACATATTGCAATATTATTATGGGACGATATTTCACTGATACTTTGACTCAAAATATTGATTTGTAAACATGAACATTTACAGAAAGGTTGActctgattttttttattttctaggTAGTGTTAGCTGGCGCAAGTTGGTTTTACCTGCGCCAAAACTCTGGTATTTTTTGTCCTTCAGCTTGTTCTCATCTTAAAGCTTGTGGGTCGTTCCATTTGATTTGAATCACTTTTTTGACAGCACCCCTTTTCATTTCAACAAACCCTTCCATCCATATTTGCCCCGTTGGTAGAAGAGCTCAGAAAGTTACTTTTATTGGACctgaatgacaaaacatttaggagatagaggtgctcaaagttgacccatttttgCATATCTTACCCTACcacgagacatccatgtcttcatcactgggaAAGATTaacggttgagtttgatatcatttacagtgccttcataccccttgacttattccacattttgttgtgttacagcctgaattcaaaatggattaaatgtatttttttttgtataataatgacacagtgaaaacctgtttttcaaaATATTTGCAACTGAATtaaataaatatctaatttacataagaatccccacccctttgctatgacactccgaACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCAAATGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCGAACGGAGCTCAGATGCCATCCCATTTACTTTGCTGTGACACTCCAAATGGAGCTCAGATGCCATCCCATTTACTTTGATCATCctagagatgtcactacaacttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442740 lncRNA downstream 796 39651685 ~ 39713832 (-) False G2136103
TU2442749 lncRNA downstream 796 39653070 ~ 39713832 (-) False G2136103
TU2442763 lncRNA downstream 796 39669202 ~ 39713832 (-) False G2136103
TU2442735 lncRNA downstream 796 39671405 ~ 39713832 (-) False G2136103
TU2442731 lncRNA downstream 796 39674318 ~ 39713832 (-) False G2136103
TU2442808 lncRNA upstream 8327 39726011 ~ 39726656 (-) False G2136118
TU2442809 lncRNA upstream 8327 39726011 ~ 39727848 (-) True G2136118
TU2442814 lncRNA upstream 41169 39758853 ~ 39921777 (-) False G2136122
TU2442800 lncRNA upstream 43245 39760929 ~ 39762904 (-) True LOC110509148
TU2442823 lncRNA upstream 60942 39778626 ~ 39828229 (-) False LOC110509145
XM_021590110.2 mRNA downstream 64262 39636463 ~ 39650366 (-) False rab31
XM_021590109.2 mRNA downstream 64276 39636463 ~ 39650352 (-) False rab31
XM_036965925.1 mRNA downstream 93536 39578217 ~ 39621092 (-) False LOC110509137
XR_005040126.1 mRNA downstream 132077 39579694 ~ 39582551 (-) True LOC118944811
XR_005040130.1 mRNA downstream 132091 39579694 ~ 39582537 (-) False LOC118944811
XM_036966757.1 mRNA upstream 2013 39719697 ~ 39763224 (-) False LOC110509148
XM_036966759.1 mRNA upstream 2013 39719697 ~ 39763224 (-) False LOC110509148
XM_036966758.1 mRNA upstream 2013 39719697 ~ 39763225 (-) False LOC110509148
XM_036966455.1 mRNA upstream 60868 39778552 ~ 39829206 (-) False LOC110509145
XM_036966457.1 mRNA upstream 60868 39778552 ~ 39829206 (-) False LOC110509145
TU2442402 other downstream 708578 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1187708 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1584221 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1774785 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 3157175 36556500 ~ 36557453 (-) True LOC110509111
TU2442821 other upstream 86111 39803795 ~ 39829179 (-) True LOC110509145
TU2442908 other upstream 225469 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 272879 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 333955 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 697619 40415303 ~ 40415540 (-) True G2137086

Expression Profile