RNA id: XM_036966455.1


Basic Information

Item Value
RNA id XM_036966455.1
length 8697
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110509145
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39778552 ~ 39829207 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTGGGGATGTTTTCAAACCCAGCAATAAACTGGACGTCACACATAGCCCGTAGTCTAGCTACTGTTCATGTTCAATATTTTGGGAAATTACTGTTTTACAAGCTACGTAGTTTTATCTTCACGATCTGAATGAACAGGCAGAACCTGATGGGCATTGAAAAGgtcCATGATGAGTGTGCTGGGCCGTAGCTAGTCACGCGGTGGGAGGGAGGACGCCCAGGATGGCGTCCGCACCACCAGCACAATGCGCCATGGCCAAACCTGGGACAGACCGAGATGGAGCCATGGTTGGGAAGAAGAACAAAGATAAGATTTCCCCGTTCACAAAGACTCTGAAGCTGGACCGGAGTAAGTTGTTGGGGGTTAAGGAAGGAAAACCACCCAAGTCTTCCATGAAACGCAAACTGTCCTTCACCATGAGCCCCCCTCGCAACGAGGAGAGACACTCCGACACAGTAGATGAGTCAGTCCCAGACCAGTCCACTGAGTCCTGGGGAGAGTCTGAGGGGAGGTTAGTGACTCCCTGCAGGATGTACTCAGCAGATAAAGATGGCCCGGATAAGAAGAAAGTCAAGAAGGAGTCTGGGGGGAGTAAGAAGGCCCCGGTTAATCTCCTGTTTGGCTACCCGCTGTCGGAACGCAAGCAGATGGCCCTCCTGATGCAGATGACCGCCAGGGACAACAGCCCAGACTCTACCCCTAGCCACCCGTCCCAGGCCCCCACGGTGCAGAAGAAGCTCCCTAGCAGCACGGCCTCCAGAGCGAGGGACAAGGTGAACAAGAGGAACGAGCGTGGCGAGACGCCGCTACACATGGCTGCCATACGAGGGGATGCCAAACAGGTCAAGGAGCTTATCAGCCTCGGAGCTGACGTCAACATTAAAGACTTCGCGGGCTGGACGCCCCTTCACGAGGCGTGTAACCTTGGTTTCTTCGACGTGGCCAAGGTTCTGATTGCAGCCGGAGCAGAAGTCAACACTCAGGGTCTGGATGACGACACTCCGCTCCACGATGCCTCCAGCAGTGGACACACAGACATTGTCAAACTGCTGCTGACACACGGAGGAAATGCGTTCCAGGCCAACAAGCGAGGGGAGCGACCTGTAGACGTAGCTGATTCTCAGGCGCTGGAGCTCCTCCTTAAGGGAGAGGTGCCCCTCTCAGACCCAGAGGATAGCCCCTCAGAGTCAGAAGGCCCTCCGTCGGTGAACCCGTCCAGCGTGGACGTTGATGACGACCACCTGGATGACTCGGACGTGGGAAAGGACTCTGACGGAAAGCAGAGCACCGTGAAGGCCCCATCCTCCATGTCCGGCCTGGATGAGTATGAGTTCAAAGACGAAGAGGACTTGAGTAAAGCCCTGAACGATCGACACATCCTCCGGAGAGAGctgagggagaaggaaaggaatcATTTGGTGAAGCAGAGCAATAAAGGGGGCGGGAGCGGCTCGGTCCAGTCCTCGAAGTCTAAGAAGACGAAGACGTCGTCCCGTGTTCGCTACTGCAGCTCGGATAGTTCCAGTGATGAGATGGAGATGCCAACAGAGAGAAGGAGCTCTCCGACCTGCTCCAACGGCTCTGAGGGACACAAGGCGTCAGACGCCAGCAGGACTAAGAAAGAGAACCTCTGCAGCCTCACGACTTCCGAACAGAAAGACAAAAGCAGCAAAGTCAAGAAAAAGAACAAGAACCAGAGCAAGAACAAGGagaaccaggaggacgagaaggaGAACAGCAAAGCTCTGGTGTTTTCCGTAGCCACCGTGTCTGTGTCGGAGACGCACATGGACAAGAACAGCCGAGGACTCTGTGGGGACGAGGACTCGTTCAAAATCTCCTTCAGTCCCAAGGACGACTCGTCCGTCCACCTTTTCCACCTGTCTGCCACCGTCAAGTCCCCTAAGCTCAACTACGGTCTGGCCGACAAGCAGCCGTCCTCCAACCCGCTCAAACAGGAGAACGCCAAGATGACGTGCGTCTCGATTGCCGAAGGCCCCTGTCCGCCAGATGGTGTCAAGTACAACCACTACAACCCAGAGTCTGAGTTCTGCACGGAGAGCTCCAGTAGTAAAGGCTGCAAGCACAAGGAGAAGAGCAAGCACCACCAGAAGGACGTCGCCGTGGACTGTAGCGTCGGGGGCGGCGGCTCCAGTCCGCATAATAAAGAACGCAGCGTGGTCCACAGCTCTGACGGTGGTGCCTTACAGAAGACGGACAAATATGGCAAAGTGGTCAAAAAACATAAACTAAAACACAAGGAGAAGAACAACCACTGCAGGGAGTATGAGGCGGACAGGGAGCGGAACCGCCACCGGCAGAAGGAGGGCGGCAGGAAGGACGGCCAAAAGAACCAGGAGTTCGACAGGGAGTTCTGGAAAGAGAACTTCTTCAATGATGACGAACCTCCGCCTCCAGGGAAAACTGAGACCGAGAGGGAggacggctctcctgtgaaggaAGAGAGGGGGACGAAAGAAATATACCTCTCTAGCATCAGTAAGGAGACGAGGCTGAGAGAGGTGCAAGAGAAGGATAAAGACAAGGTGGTGAAGAAGGAAGGGAAGGAAACCTCTGCTGTCTGTAAAGAGAAAGGAGGAAAAGATGGGAAGCCCATTGAGcgtgaggagaggacagagtgcTCTACCTCTGGATGGACTACCTCTCTTCCTGAGGAGACGCAGCATAACACTACAAGCGTGAAAGATGAACCGGAGGATAAACCGGTAACGGAGACCAAGTCTACGGCTGATCTAGCCCGACTGGATGCCTCTGCGAAAGACCAGCGGGACAAATCTGACAGGAGGCCTTCTGTAAAAGAACGGGAGACTGATAAAAAGAATCCCGATAAGGAGAAGAAGGTTAAGATGGAGCACCTGGAGAAATCAGAGAATTCGCTAAATTCCATGGATCgctggagggagaaggagaggatggtGTCTGGCTCATCTCATTTGTCCCCTGGTGACAAGAACCACAAGGAGAGCGAAAAGCTCAGAGCCTTGTCCACGACAAAAAAACACGAAGAGAGCAAGGACAAGAAGAGCAAAGAGAAGCCTGATaagaagagcgagagggagaggcaggagagggagTACAGAGACAAAGATAGGATAGGCTGGGATAACAAAGGAAAACCACCTTCAGAGAAATGCACTGATCAAAGTAAATTGGATCGTGCTAAGGAGAAAGACAAAGACTGCGATAAGAAGAAAAAGGAAAAATCTAAAGACGGCTCTTCATCTTCCTCCAGCTCTAACCTGAAGCTCCCCTTGGAGGAGAAGAAAGGCTATGTGTCTGAAAGTGGCAAGACCACACCAGCAAAACTGCTAAAGGAGGAGGTCCTGAAAACGCCAGAGAAAGACCGAGACCGAAGAGACAGAGAATCCAGAGACTTTGACCGGCACAGAGATCGAGACAAAGATCGTCACAAGAGCGACAAGGACCGTTCCAAGGCCTGTAAGACCAAATCCAACGAGACTGAGACTGACCGAGACAACAGGTCCAAAGCTAAAGCCTCGCCTGCCACCCGGGAAGAGAAGCGACCCAAAGAGAAACGTCTGGTCAACGAGGACCTGAGGCAGACCAGTTTCGAACGAATGCTGAGTCTGAAGGACCAGGAGATTGAACAGTGGCACCGGAAGCATCTAGAAAAGAtcaaacagaaggagagagagaggatgaaacaACGACCCTCCTCTACGACAACAGACCCAGGGAAGCTCAAAAGCAAAGCCAAGACGATGTCCTTGTCATCTGGAGAACAGTGTTCGAGCAAAGAACTGCTTCGATCCAAGAGCTCCGAAGGATCTGGCGACGCTCATGGCCGGGACCGAGACAAACCTATAAAGGAGAGCACCAGCTCCAGGACCATGTCCCTAGACGGGAAAACACTCTCCTCCCTCAGTGGGAAGTTGATGGCTGGTATTGAGAACAGCTTGAGCAGGTCCCCCAGGCCGGAGAGCGAGCGGGCGGGTCTCATGTCCAGGTCCGTGTCGATGTTCTCCATGGCCAGTTCTGAGGACTCCAGTCAGGCAACCATGTTGACGCCGAGACCCGTAGAGTACGACTCGGATATGACCCTGGATGCCTCCCAGGACTCTCAGCCGCTTTTCCTACTGTCTTCCCTCCTCTCACAGTCTAGATCACCTGCCATTCACGACAAAGACCACAACGGTCTTCCAGACTCAGCGCAAGGTAACAGGACTCTGCTGCAGAGCCGACACACTTCCCCTTACCTTATAGCTATTCTGGACGAGGAAGCAAACTCTGCGACGGCAGCTAAACATTTTGAAACTCTGTCAAAGGCCAGCGTGGTGCCTGCTGCTCAACCAAATGAAGAGCCTTCAGCTTTTCAGCCTCCTTCAGAAACCTGTGCAGATCTGGAGGAGAGCCAGAGTCAAAGGGGTCCTACTCAGATGCTTCCAAATCTCTCTAATGCAAGGACATATGCAGATCTCAACACTGAGAGTGAAGGTAACACCGCTCCAAGAACCGATGCAGATCTCAACACTGAGAGTGAAGGGAACACCGCTCCAAGAACCGATGCAGATCTCAACACTGAGAGCGAAGGGAACACCACTCCAAGAACCGATGCAGATCTCAACACTGAGAGCGAAGGGAACACCGCTTCAGGTGTCCATCTTCCACCTCAAGCGTCCAACACCAGAGATCCTCACGTAAAGGACTCCTCAACACTTCAACGGGCTAGTGTCCAACAGCTAGTTACGCCAGAACAGAGAGGGTTTTCTTCCACCTCTGATCCTCTCCTAATACGGGACGTCCAGTGTATCCCTGTAGAGACTTCCAGTGCGGCGCCCGAATGTAGCATGAAAGACCTGCCCTCTGAGGACATGACGCCACTGGTGACATTATCTTCTCTATCCTGTCAACTGCCGTTCTCCAGCACCGAAACCACCTCATCTCACTCTGCTAGCCAGTCACGGGAAACCCTTCCAAACACCAGTACGGTGACCTCACAGCAGACGAAGACAGAGATTGGTGGAGATTTGGCTCTTGATCCTAAAGATACAACTCCAGTTGAGAGTGCAGCCAGCAGCTCTGAAAACAGAGCAGCTGTAGAGAGCCTTGACAGTGTGTTAGGAGCGTCTAGACCAGGAGCAATGGACAACCCAGTAGCCTCCACCAGCAGTGTTAGTACAGAGGAATCTATGCAGAGTAGAACCAATGAATCTCAAGAGGACATGGACACTGACGCAAGCTTTCAGGATTATAAGCAATCCAGATTCTCCAGTGACGTTGTCGACTCCAGCGATCCTCAACCGGGGAAAAACGATCTTGCTAGCCAGCATACACTGTCTACTGTGTCGCGATGGCCGTGCCTTGAACACAAATCGGAAGAAACTTCTGATACACCTGACAACACATTGGAGAAGAGCAGAGGTCCTGAGGTCATGTCAACAGGAAGGACTAGTTGTCGGTCTTTGTCAGAGGGCAGTAATATGGTCACCGTCCCTGAGGTGAAATTAGAGCCATGCCCAGAGCCAGTGGAAGTCGCATCTACCTCTGAGGAGAGATCAGAAGGACAGACACTGTCCGGTGCTTCTGGACAGTTTAGTAACTTCCAGCAAGGCTCGCAGACAGACCagagtggtagtagtggtagttacAGCTGCAGTGGGTTTTCTGCTAGCTCTTCCCCCCAGTCTGGGGACAGAGACTCTGACTCCTCCGGGGCTAAGGCCAAGGTCCGCTCCGTAACCATGGAAGAGGACCAGGACCTCCAGCAGACCCACCCCAGGAAGAGGAAAATGCCAAGGATGTCTACCTCAAACCAGGCCGGAGGCAGCACACAACAGGGGATGGAGAAGCCTCAACCGTCTCTGGCGGCCATCGTTGACTCTCTGAAGCTGGAGGAGATTCAGCCGTACCAGACGGAGAGGGCCAACCCTTACTACGAGTTCCTGCACATCCGCAAGAAGATCGAGGATAACCGCAAAGTGCTGCTGAGCGTCATCCCCCAGCCGCCGCAGTATTACGACGAATACGTGACGTTTACAGGATCGTACCTGCTAGACGGGAACCCCTTCGGCAAACTCTGTATTCCGACTATAACTCCCCCTCCGTCTCTACCGGACCAACTGAAGGAGATGTTTAAACAACAGGAAGTCGTTCGTATGAAGCTACGCTTGCAACACAGCATTGAACGGGAAAAGTTAATTGTTTCCAACGAACAGGAAGTGTTACGAGTTCACTACCGGGCTGCCAGAACACTAGCCAATCAGACGCTCCCGTTTAGTGCGTGCACCGTGCTATTGGACGCCGAGGTGTACAACATGCCGCAGGATGCCCAGGCAAGTGGCATGATGTCACGTACTGTAGAATCAGGAGACCAAGATGGCAAGACGTCTGTGAGGGATCGTTTCAACGCCCGCCAGTTTATGTCCTGGTTGCAAGACGTGGACGACAAGTTCGATAAACTCAAGacgtgTCTTCTGATGAGGCAGCAGCACGAGGCAGCAGCTCTTAATGCTGTCCAGCGTCTCCATTGGCAGCTGAAACTCCAGGAGCTGGATCCAGTCGTGTACAAGTCCACCTCCATCTTCGAGATACCCGAGTTCTACATCCCCCTGGTAGAGGTCAACGACGACTTTGACCTCACGCCCATATGACCCGTGACCTTTAGGCTACACGACCCACGGTAAGGGTCAGGCAGAGGACTGATGAGGACGGATCATCTAGTGGCCAACTACCTCGAACAGGAATGAAGTGATGGAGGGGGTCACATGTTAGAAGGAATGAAGTAGAGAAAAGAAAGGTCAAGCACTGAAGTTGCCGGAACTTGGGGGTGCCGCTCTTGGGGGTGCGTGGTTAGAGAGCACTGCTCTTGGGGGTGCGTGGTTAGAGAGCACTGCTCTTGGGGGTGCGTGGTTAGAGAGCACTGCTCTTGGGGGTGCGTGGTTAGAGAGCACCGCTCTTGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTCGGGGGTGCGTGGTTAGAGAGCACCGCTCTTGGGGGTGCGTGGTTAGAGAGCACTGCTCTTGGGGGGTGCGTGGTTAGAGAGCACTGCTCTTGGGGGTGCGTGGTTAGAGAGCACTGCTCTTGGGGGGTGCGTGGTTAGAGAGCACTGCTCTTGGGGGTGCGTGGTTAGCGGGCACCGCCCTGTGGAGACTACCATCCCTGTGCCCGCTGCACCTTCCTCACCAGGCAGGGTTACGAAAAAAAGAATACAATTCTACTTTTGTTTTCAAGTGCGTTTTGTTCAATACATAATGTACAGACTTGTGctcttaattattttttttaacttattttcTACGTAAAGATTGTGCATTTGTAAATAACCCATGTAATTATGGTTTTAAACTTGTACAGGGAAAAAATAAGTAATAGATATTTTAATCGTAAAAGGTTATTGTTTTGTCTGGAccaaagttgttttttttttatattgagtCGGTGTCAAGTTCCTTGTTATTATTGTTAGTCGATGTTATTGGCTTAACTCTTGAAGCATGTGTTGAATCGGATTTGGTTCCGTTTGGTTCCGTTGTTTCTTCCGTCTCCATTTCCCCTCTGGACTGGAGTTGGATCCAGGCATCACAACGAAGGTGTTAATTCTAATGGAGTTGGATCCAGGCACCACAACGAGGTGTTCGTTCTAATGGAGTTGGATCCAGGCACCACAACGAGGTGTTCATTCTAATGGAGTTGGATCCAGGCACCACAACGAGGTGTTCATTCTAATGGAGTTGGATCCAGGCACCACAACGAGGTGTTCATTCTAATGGAGTTGGATCCAGGCACCACAACGAGGTGTTCGTTCTAATGGAGTTGGATCCAGGCACCACAACGAGGTGTTCATTCTAATGGAGTTGGATCCAGGCACCACAACGAGGTGTTTAATTCTAATGGAGTTGTGATTTTTGGATGCTGCTGTTGTCGTTGCAGGCTGGTAGCTGTTACTCCCCAGAAGAAGCTGTACCGGTGAAAGTTCAGTTaaaccttttaaaaaaaaagtcaTTCGTCGTCATTCGCTCCCCTTCGTTTGCAACAgagtgcatctgaaatggcaccctattccctatatagtacactacctttcatCAGGAACATATACTGGCTctagtgaaaagtagtgcactatataggcgatagggtgccatttgggatactgGAACACTCCGTGTACAGCCTCTctatcccgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtggtccggTGGGTGTGTCATTAAAAAATACAACGTTTGTTGTGACTTCTATTAGGAGAAGAAAATACCCATCCTTTTCCAGTTTTAATGTGAGAATTTAATGCAACAAAACCTATTTTTTCAAATGTCATTTTGAACAGAAGTTCTAAAAAAATATGTCTATTTTAATATTTACTTGTTACATGACATGTACAtatttgtaatatatatatatatatatatataattgaatAAATTTTATTGGTTGTGAATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2442800 lncRNA downstream 15648 39760929 ~ 39762904 (-) True LOC110509148
TU2442809 lncRNA downstream 50704 39726011 ~ 39727848 (-) True G2136118
TU2442808 lncRNA downstream 51896 39726011 ~ 39726656 (-) False G2136118
TU2442772 lncRNA downstream 62472 39715841 ~ 39716080 (-) True LOC118944836
TU2442771 lncRNA downstream 63679 39714554 ~ 39714873 (-) False LOC118944836
TU2442871 lncRNA upstream 4473 39833679 ~ 39834325 (-) False G2136156
TU2442872 lncRNA upstream 4473 39833679 ~ 39834200 (-) False G2136156
TU2442873 lncRNA upstream 4473 39833679 ~ 39834276 (-) True G2136156
TU2442878 lncRNA upstream 17903 39847109 ~ 39847932 (-) True G2136161
TU2442879 lncRNA upstream 18252 39847458 ~ 39847851 (-) True G2136162
XM_036966758.1 mRNA downstream 15327 39719697 ~ 39763225 (-) False LOC110509148
XM_036966757.1 mRNA downstream 15328 39719697 ~ 39763224 (-) False LOC110509148
XM_036966759.1 mRNA downstream 15328 39719697 ~ 39763224 (-) False LOC110509148
XM_036966346.1 mRNA downstream 60868 39714628 ~ 39717684 (-) False LOC118944836
XM_021590110.2 mRNA downstream 128186 39636463 ~ 39650366 (-) False rab31
XM_036966460.1 mRNA upstream 14105 39843311 ~ 39869936 (-) True ndufv2
XM_036966544.1 mRNA upstream 144161 39973367 ~ 40103148 (-) False LOC110508256
XM_036966545.1 mRNA upstream 146308 39975514 ~ 40103148 (-) False LOC110508256
XM_036966923.1 mRNA upstream 286195 40115401 ~ 40127201 (-) True LOC110509140
XM_036966347.1 mRNA upstream 339205 40168411 ~ 40317511 (-) False LOC110508253
TU2442402 other downstream 772502 39005461 ~ 39006050 (-) True G2135837
TU2441345 other downstream 1251632 38519571 ~ 38526920 (-) True G2135034
TU2440825 other downstream 1648145 38128129 ~ 38130407 (-) True G2134625
TU2440638 other downstream 1838709 37766718 ~ 37939843 (-) True LOC110509127
TU2439020 other downstream 3221099 36556500 ~ 36557453 (-) True LOC110509111
TU2442908 other upstream 113947 39943153 ~ 39945834 (-) True G2136189
TU2442946 other upstream 161357 39990563 ~ 39997046 (-) True LOC110508256
TU2442992 other upstream 222433 40051639 ~ 40121899 (-) True G2136243
TU2444084 other upstream 586097 40415303 ~ 40415540 (-) True G2137086
TU2444112 other upstream 642882 40472088 ~ 40475701 (-) False G2137111

Expression Profile