RNA id: TCONS_00055523


Basic Information

Item Value
RNA id TCONS_00055523
length 2342
RNA type mRNA
GC content 0.34
exon number 7
gene id XLOC_028629
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13923927 ~ 13931508 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCAGGGATAAAGATGAGTGGTGGTTTAGCGCCCAGCAAAAGCACTGTTTATGTGTCTAACATCCCATTCTCCTTGACAAACAGCGATATGCACAAGTTATGCTCAAAATATGGCAAAGTAGTCAAggTGACTATTGTCAAAGACAAGCATACGCGGATGAGTAAAGGAGTGGCGTTCGTGCTGTTTCTAGACAGGGAGTCTGCTTATAACTGTTCTCGCTCACTGAACAACAAACAGTTGTTTGGGAGAATGGTAAAGGCCAGCATTGCCATAGATAACGGGAGAGCTGCAGAATTCATCCGAAAGAGAAACtacacagacaaatccaaatgttaTGAATGTGGGGAAGAAGGGCATTTGAGTTATGCCTGTCCCAAAAATTTACTAGGAGAGAGAGAACCTCCacctaaaaaagaaaagaaaaaaaagaaaaaggtccaGCAGCCTGAAGAAGTagaaccAGAGGACAGTGAGGAAGAAGGAGAGGATCCAGCACTGGACAGTTTAAGTCAGGCAATTGCTTTCCAGCAAGCACGCattgaggaggaggagaagagaaGGAAGCAGGCTGCAGAAGATGCGTCTCAAGCATCAACATCAGAGGACACCCACAAACCCAGGATCAAAAAGAGCGCATACTTCAGTGACGAGGAGGAGCTCAGTGACTGACTCACACTTTTATGTGCTAAGAACACATCGCCTCTTCTCAACCGCTTTTACCTGTTAGGAAAGCCACATATTGATCTAAATTTATAATTTTGTCAGACTTTGCTGCAGTACATTAAACTCTTGATCTGAATTTTTCACAAATATTTATTCAGATATATACATCTCTGATATTTCAgaatatagtttatttaaacatccCCCACCAAACTTctgtaaagtttttttattacattttgtaaatataatttaggcttgtttattttagttacatGATTGCTGTTGTTCCAGGAAAATAAACTCTTTTGAATAACTTCCTGTCAACCTTTTCCTCCACTCTCGACAGTCATTTGAAAGCTTCCGAAATCATTTGACTCACTGACATAAGTGATGCATGTGGGTATGCAAGGTTTTCAATAGCAGTATGTGCATTCTCAATTAGAAAGACACCAAAAAGTGTAAACAGGTTAATTGAAATGaattatataactttatttaattggCAAATATGAgtgtcttttttatttagtgaTAATTTTAGCGGCTTTAAAggcaaattctgtcatcatttactcccacttgacttgttccaaaccagtttgaactgttttgtactgttgaacacaaaagaagatgaacTGAGGAATGTTAGATAACCGGTAACCAGTGGCATTCACAGTgcggaaaaaataaatattgtaaaagtcagtggttacaggtttccaacattcttcagtttattttcttttgtattcaactgaGCAAAAAGTGCATcatattcaaaatgtaatatttgaccctcttattttaatagattttaaacTAGGTACAAAAACGCTTCCTCTCAAGACTTTTAGGACAAAAATGTCCCATCTGAAAACTGTTAAAGCTGCAATATCTTTCACAATTTAAAGGACATGTCATAAAATCTGTTAACAGGCTTCTATTCTATAAAGAATGTAGTTTTATGAAAtgctacatttttattaaatgcaaaatgcACTTTTTTTCAGGGTCTGGCAAAAATAAATGCTATTAAATATTCAACTATTGAGCAGTAGAGgcctaattatttaaaatgataaaattatgTACATATATTGGTGTGAATATCAAATTGTATCtataatcagggtttctgcaggtttcattaaGTCACATTTAAGACAATTATGAATAAAagtttagacttatacagggctaaacactaatgattttttttctaatggccaatGGAAATTATGCTTGCcacaaaaatgtttatatatttattagcaACATACTTTGGTAacttagtttaggtcacaattcacagtattaacttaccattaactaacacttctagcttaataaactacttatTAGCTGTTTGTtattagtaaggtagaagttggctTTAGGTTCagagtaggattagggatgcaggaTAAGATTATACTTTAGAACTACTAATGAGCATTAATGTCTTGATAGTAGGCAGGTGATTAGCCAGTAGTTAATACCATTAATTGTGatctaaactaaaaaaataaactctagttgtatacacgatttagatttttttttttttaatgacaagtttaacattgtaaaaagtatatttattttggaggcaattacataaataatcaaaaatatatatttgttggcttttggtccaaACTGATTGAGTA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-041210-114 Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1).

Ensembl:

ensembl_id ENSDART00000067172

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055522 lncRNA downstream 2757 13909308 ~ 13921170 (-) True XLOC_028628
TCONS_00058129 lncRNA downstream 34445 13880536 ~ 13889482 (-) True XLOC_028626
TCONS_00058128 lncRNA downstream 34650 13880536 ~ 13889277 (-) False XLOC_028626
TCONS_00055517 lncRNA downstream 297094 13625982 ~ 13626833 (-) True XLOC_028624
TCONS_00055513 lncRNA downstream 309106 13605607 ~ 13614821 (-) False XLOC_028623
TCONS_00058130 lncRNA upstream 37868 13969161 ~ 13979713 (-) True XLOC_028631
TCONS_00058131 lncRNA upstream 175382 14106675 ~ 14108866 (-) False XLOC_028632
TCONS_00058132 lncRNA upstream 176041 14107334 ~ 14123788 (-) False XLOC_028632
TCONS_00055530 lncRNA upstream 176041 14107334 ~ 14123958 (-) False XLOC_028632
TCONS_00055531 lncRNA upstream 176041 14107334 ~ 14123983 (-) False XLOC_028632
TCONS_00055520 mRNA downstream 2721 13905522 ~ 13921206 (-) False XLOC_028628
TCONS_00055521 mRNA downstream 2742 13906541 ~ 13921185 (-) False XLOC_028628
TCONS_00055519 mRNA downstream 21739 13892773 ~ 13902188 (-) True XLOC_028627
TCONS_00055518 mRNA downstream 200771 13698985 ~ 13723156 (-) True XLOC_028625
TCONS_00055516 mRNA downstream 309130 13609420 ~ 13614797 (-) True XLOC_028623
TCONS_00055525 mRNA upstream 32206 13963499 ~ 13995766 (-) False XLOC_028630
TCONS_00055526 mRNA upstream 32212 13963505 ~ 13973213 (-) False XLOC_028630
TCONS_00055527 mRNA upstream 35158 13966451 ~ 13973213 (-) True XLOC_028630
TCONS_00055534 mRNA upstream 239166 14170459 ~ 14173138 (-) True XLOC_028634
TCONS_00055537 mRNA upstream 249704 14180997 ~ 14185225 (-) True XLOC_028637
TCONS_00055510 other downstream 356652 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055502 other downstream 668114 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055495 other downstream 945028 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055491 other downstream 1009757 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 1142792 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055533 other upstream 235749 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 245228 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 257234 14188527 ~ 14189659 (-) False XLOC_028638
TCONS_00055543 other upstream 259759 14191052 ~ 14191984 (-) True XLOC_028638
TCONS_00055545 other upstream 266731 14198024 ~ 14205228 (-) True XLOC_028639

Expression Profile

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