RNA id: TCONS_00055525


Basic Information

Item Value
RNA id TCONS_00055525
length 3389
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_028630
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13963499 ~ 13995766 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGGATTCAAACTGGCTTTCTGCGTCTCCGCTATGCTGACCCATTGCTTCGCGATATTTGGATACTGAGCCCCTCCGCGTCCTTTACAAAGACCGCTGGTTTACTTTCTGACAGCTGTACGGGAGCAAATGACACCAGTTGTGAATATTTTCTAACAGCAACGGGAATAAAATACCTCACTTCGTCACCTGCCCCCATCCCATGAGTCTTGAGACTACATCTGGGATCTGGCCCATTACTCGGGCACCGGACATGGACTCGAGAGGAGCCAAGGCATTTGGGTTTCAGAGGAGTTCAACGTCTGATGACGACTCTGGATGTGCTCTTGAGGAGTACACATGGGTTCCTCCTGGACTACGGGCTGAGCAGGTTCAGATCTACTTTTCGTGCCTACCAGAAGAGAAGGTGCCATATGTCAACAGCCCTGGAGAGAAGCACAGGATCAGACAACTACTCTATCAGCTGCCACCCCACGACAATGAGATTCGATACTGCCAGTCCCTCAGTGATGAAGAGAGACGAGAACTCCACATGTTCAGCatgcaaagaaagaaagaggcaCTTGGGAGGGGGACCCCAAAACTGCTTCCCAGAGCTCTGCAACATAATTGTGAGCATTGTAAAGAGAACATCAACGGTGGAGAGATGGCAGTGTTTGCTTCGAGAGCAGGCCCCGGCCcttgctggcacccagcatgcttTACTTGCTACACCTGTCATGAACTTCTGGTGGACCTCATCTATTTCTACCACAATGGCAATATCCACTGCGGCAGACATCATGCAGAGCTTCTGAAGCCACGTTGCTCAGCATGTGATGAGATTATCTTTGCTGACGAGTGTACCGAAGCTGAGGGTCGTCACTGGCACATGAAACATTTTTCATGCTTTGAGTGCGAGACTATTTTAGGAGGACAGAGGTACATCATGAAAGATGGCCGACCCTTCTGTTGTGGATGCTTTGAGTCATTGTATGCAGAGTACTGCGAGGCCTGTGGAGAGAATATTGGAGTCGACCATGCTCAAATGACGTACGAGGGTGTACATTGGCACGCTACTGACAAATGCTTTTGTTGTGCACAATGTAAAACCTCTCTGCTGGGCTGTCCCTTCCTTCCAAAAGATGGTCGTATCTACTGCTCTAAGGACTGTAGCCTAGGTGAGGATGTCCAGGCTTCTGATTCTTCAGACTCCGCTTTTCAGTCCGCCAGATCACGGGAATCTCGACGCAGTATTCGAATGGGCAAGAGTAGTCGCCCCACAGAACAGTGCCAGCAGACAAAATTGTACTCAGCAACAGATTACAGGACCTCTAGTCTATGTGGCGACAACACAGAGACAATGTGTCATCAGCTGGAGAGAATCAACTTTACAGAAGACAACTACTGGAGAGAGCGAGATGAGCAGGAAGCCCCTGAGGACTCTGTGGAAGATTGGGCTGAGCATGAGGACTACATGACTCAGCTGCTCCTGAAATTTGGAGACCGTGGTGTCATCCACGCAGAGGACAGCAGGGCAGCAGAGCCATGGATGGTGAAAGACACCGAAACCAACCGAACCAAACCAGAGATAAAGATGAGCGGCCACAATTTGGCAAGTAAAAAGCACCACACTGACATGTATTGGGCCCAGTCTCAGGATGGACTTGGAGACTCTGCTTATGGTAGTCACCCTGGACCAGCTAGCGCTAGAAAGATTCAAGAGCTGGAGATGGATCAGGGAACAGTACCTGGATTTTGGTCTGAGCCAAGGCAATGGTATGAAGACTCATTAGAGTGCATTACAAGTGAACTCCGGAAGGCAGACCACAATATTGGAGATTCTATGGATTCTCTGGCTCTCTCAAATATTACAGGAGCTTCAGTGGATGGGGACAGCAAGGACAGACAGACCATTTACTCCCTCCAAAACATGAAAGACCAAGAAAGAGAGATAGAAGAGTGTGATAACATTAGTAACGTAGGCACACTAAACTCCTCAATGCTCCACAGAAGTGCTAATTCCCTGAGGAGTTTAAACTCCGAGCTAGGTCATGAGGAGACACTGGGGCAGGGAGCAAGAGAAGACGATGAAGAGGACAGAATACCACCATATTTTGGAGCAGAACCACCATCTCCTCTGAATCTTCCAGTGCTGAGAAGGACCAAGTCACAATCTCAGCCGCAATCCAGATCTCAGCAAGTAAAGTTCTCTGATGATGTTCTGGAGAAAGGGTATTATGGTGCACTGGGCTTAAGGCAACCACCAATGAGTGAGAGGACACGCAGGAGGACCTTTCACATAGAGGAGGAGGCAGCGGCAGCAGCAGAGAGACGTCCTGCTAACAGACATCACCACAAACGCAGGCACAGTCGGAAAACGCGTTCAGAAAATGCATTGCACCTGCCTTCCAAAAATCGTGGGAAACTGCATGTTGTGCCTCAGGTAATCAGCTCAAACATGCCAGAGCCCAGGAATGGTATTCTACTAAATCACTCGGCGCACAGTCAGCACCCTTATCGTCAAACCACCTCAGACTTTCCTCAGCAAGGTATGGTCCGACTGGACCAATTCCAGGACTTTTGTGATGATGACGAAGAAGATGATTGGTGTTCAACATGCTCTTCTTCATCTTCAGAATCTGAGGAGGAGGGATTCTTTCTAGGTCAGCCAATCCCTAAGCCCCGATCCCAAAGTTTTCATTATTACACAGAGGACTATCCGACTCGGGTCACGGCTTTAACGCCTCCTTTTGGCTCAAGGACCAAACTGAAAAAGAAAGGTCACAAGGGCAAGAACTGCATAATTTCTTAGACTGAAGATTGCCTCTGTTTCAGCTGGAATATACTCATGCCTGATCCTACAGAAGATGGAAAGTTCTCTTTACAAACACTGAGAGCCAATTACGTTGCTGTTGTACAAACAAAGAAAGTAACATGTAAGATTTCCTTGTACATTGTATAGCAAAAGCATTATTCCCAAAAGCGAAATAAAAGTAGCATGTAGActaactaaataattatttaatagtgCAAGCGATGTATATTTGTTAAATTAAGATTGGAATACTGATATTTTTATATCCAATTATGTTAAATGAGTAATTACCACAATTTACTGACCTGATGgagtttttatgattattaaatgaACTAATTGAGGTTTGCTGACCAGGGATTTGCAAATGCAAAATATATATGCACTATTCATGCGTGATGCCCTCGTTATGTTATTCTACAAGGTGTAATAAGTGCACCCTTTAAGATTTCTCTGTCCATAATGTGTTTATGCGCTTAAACAATGTTAGGGGAATCTTTCCTCTAGTATATACACAATACACCACAGGTAACCATGCTATCCTTTTTATCGTTGAGATGTCAATAAAATATTTCAAGAGAGATTTAAAACA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0001764 neuron migration biological_process
GO:0021934 hindbrain tangential cell migration biological_process
GO:0097475 motor neuron migration biological_process
GO:0021754 facial nucleus development biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2152 Predicted to enable zinc ion binding activity. Acts upstream of or within nervous system development and neural crest cell migration. Is expressed in several structures, including mesoderm; myotome; nervous system; neuroepithelial cell; and pharyngeal arch. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 1B. Orthologous to human PRICKLE1 (prickle planar cell polarity protein 1).

Ensembl:

ensembl_id ENSDART00000147955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055522 lncRNA downstream 42329 13909308 ~ 13921170 (-) True XLOC_028628
TCONS_00058129 lncRNA downstream 74017 13880536 ~ 13889482 (-) True XLOC_028626
TCONS_00058128 lncRNA downstream 74222 13880536 ~ 13889277 (-) False XLOC_028626
TCONS_00055517 lncRNA downstream 336666 13625982 ~ 13626833 (-) True XLOC_028624
TCONS_00055513 lncRNA downstream 348678 13605607 ~ 13614821 (-) False XLOC_028623
TCONS_00058131 lncRNA upstream 110909 14106675 ~ 14108866 (-) False XLOC_028632
TCONS_00058132 lncRNA upstream 111568 14107334 ~ 14123788 (-) False XLOC_028632
TCONS_00055530 lncRNA upstream 111568 14107334 ~ 14123958 (-) False XLOC_028632
TCONS_00055531 lncRNA upstream 111568 14107334 ~ 14123983 (-) False XLOC_028632
TCONS_00058134 lncRNA upstream 111568 14107334 ~ 14124081 (-) False XLOC_028632
TCONS_00055524 mRNA downstream 31991 13925287 ~ 13931508 (-) True XLOC_028629
TCONS_00055523 mRNA downstream 32206 13923927 ~ 13931293 (-) False XLOC_028629
TCONS_00055520 mRNA downstream 42293 13905522 ~ 13921206 (-) False XLOC_028628
TCONS_00055521 mRNA downstream 42314 13906541 ~ 13921185 (-) False XLOC_028628
TCONS_00055519 mRNA downstream 61311 13892773 ~ 13902188 (-) True XLOC_028627
TCONS_00055534 mRNA upstream 174693 14170459 ~ 14173138 (-) True XLOC_028634
TCONS_00055537 mRNA upstream 185231 14180997 ~ 14185225 (-) True XLOC_028637
TCONS_00055538 mRNA upstream 192561 14188327 ~ 14191717 (-) False XLOC_028638
TCONS_00055539 mRNA upstream 192561 14188327 ~ 14192254 (-) False XLOC_028638
TCONS_00055540 mRNA upstream 192734 14188500 ~ 14191434 (-) False XLOC_028638
TCONS_00055510 other downstream 396224 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055502 other downstream 707686 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055495 other downstream 984600 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055491 other downstream 1049329 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 1182364 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055533 other upstream 171276 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 180755 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 192761 14188527 ~ 14189659 (-) False XLOC_028638
TCONS_00055543 other upstream 195286 14191052 ~ 14191984 (-) True XLOC_028638
TCONS_00055545 other upstream 202258 14198024 ~ 14205228 (-) True XLOC_028639

Expression Profile

//