RNA id: TCONS_00058130


Basic Information

Item Value
RNA id TCONS_00058130
length 325
lncRNA type sense_over
GC content 0.42
exon number 2
gene id XLOC_028631
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 13969161 ~ 13979713 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGATTTGGCACGTATAAGTTTTCCGTTTTCTTTTATGACCAGGTATCTCACACCAGCTTGTGTCTTTTAACTCGTACGCGAGTCTGAATATTAACACAGCGGTGAGAAAAGCAGTCGTTGATGGATGTATCGCTTTGACCGACAGGAATGGGCGAGACTTGAATCGCTTTCATTAGATTGCAATGCCTGTACAGCAGTTTCCAGGTGTGAAGAGTCGATTCAATTCAAACAGGGCCTTAGTGTGTTGGCTTAAACTGCCTGAATTGTACTTGTGTGGTTTAAGGACTAGTCTCAACAAAACAGCCATTTAGAAAACCTAGTTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055522 lncRNA downstream 47991 13909308 ~ 13921170 (-) True XLOC_028628
TCONS_00058129 lncRNA downstream 79679 13880536 ~ 13889482 (-) True XLOC_028626
TCONS_00058128 lncRNA downstream 79884 13880536 ~ 13889277 (-) False XLOC_028626
TCONS_00055517 lncRNA downstream 342328 13625982 ~ 13626833 (-) True XLOC_028624
TCONS_00055513 lncRNA downstream 354340 13605607 ~ 13614821 (-) False XLOC_028623
TCONS_00058131 lncRNA upstream 126962 14106675 ~ 14108866 (-) False XLOC_028632
TCONS_00058132 lncRNA upstream 127621 14107334 ~ 14123788 (-) False XLOC_028632
TCONS_00055530 lncRNA upstream 127621 14107334 ~ 14123958 (-) False XLOC_028632
TCONS_00055531 lncRNA upstream 127621 14107334 ~ 14123983 (-) False XLOC_028632
TCONS_00058134 lncRNA upstream 127621 14107334 ~ 14124081 (-) False XLOC_028632
TCONS_00055524 mRNA downstream 37653 13925287 ~ 13931508 (-) True XLOC_028629
TCONS_00055523 mRNA downstream 37868 13923927 ~ 13931293 (-) False XLOC_028629
TCONS_00055520 mRNA downstream 47955 13905522 ~ 13921206 (-) False XLOC_028628
TCONS_00055521 mRNA downstream 47976 13906541 ~ 13921185 (-) False XLOC_028628
TCONS_00055519 mRNA downstream 66973 13892773 ~ 13902188 (-) True XLOC_028627
TCONS_00055534 mRNA upstream 190746 14170459 ~ 14173138 (-) True XLOC_028634
TCONS_00055537 mRNA upstream 201284 14180997 ~ 14185225 (-) True XLOC_028637
TCONS_00055538 mRNA upstream 208614 14188327 ~ 14191717 (-) False XLOC_028638
TCONS_00055539 mRNA upstream 208614 14188327 ~ 14192254 (-) False XLOC_028638
TCONS_00055540 mRNA upstream 208787 14188500 ~ 14191434 (-) False XLOC_028638
TCONS_00055510 other downstream 401886 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055502 other downstream 713348 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055495 other downstream 990262 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055491 other downstream 1054991 12906981 ~ 12914170 (-) True XLOC_028606
TCONS_00055473 other downstream 1188026 12777709 ~ 12781135 (-) True XLOC_028602
TCONS_00055533 other upstream 187329 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055536 other upstream 196808 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055542 other upstream 208814 14188527 ~ 14189659 (-) False XLOC_028638
TCONS_00055543 other upstream 211339 14191052 ~ 14191984 (-) True XLOC_028638
TCONS_00055545 other upstream 218311 14198024 ~ 14205228 (-) True XLOC_028639

Expression Profile

//