RNA id: XM_036966040.1


Basic Information

Item Value
RNA id XM_036966040.1
length 2381
RNA type mRNA
GC content 0.50
exon number 7
gene id cfap410
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42360747 ~ 42368140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCATGGAGGACTCGCCATGTCCCAGAATGCACCGCGGGACCCACTGACGACGCAGGACCCCTCCTCCCATTTCTTCTAAAGTACATCTGTTATATGTGACACCTTTCCATCTGCTCTTTGTGAGTGTGAGAGTGGAAATGGTTAACCGGATGGTAACGTCCGGTAACGTCGGTAACTACAGACGCCACGGTAGCCCGCCCgttcacagtacacacacacacaggcgttaCTGGTCCGGTAGGTGTGCTGTGTAGCTATAAATGATCTGATGGGAGCTGCATTGCCACGATACTTTAGTTTGGATCGATAATTGGTTATTAGAGACTCGTATAATCACCCACAACACGTCTGCAGTATGAAGCTAACACGGAAGTTGGTCCTGGCCAAAGCCAAGGCCTCGGATCTGGACAGTGTGAAGAAACTCAACTGCTGGGGCTGCAACTTGACAGACatCTCCATATTTACCCAGATACCCCACATCGAGGTCCTGACTCTCAGtgtgaaCTCCATCTTGTCCCTGTCATCTCTGTcgggctgtgtgtgtctgagtgagttGTACCTCAGACGGAacctcatcccttctctctcagAGCTCTCCCATCTCCGCCCCCTCACACGCCTACGAGTGCTCTGGTTGGCTGAGAACCCCTGCTGCGGAACAGTCCCCAGCCAATACCGTCTCAACGTGCTGCGATGCCTGCCACGCCTACACAAACTGGACAACCAGGtggtgACAGAGGAGGAGCTTGTTTTCGCTCTCAACGAGGGAGAGGAGATAACCACACCCCCTGCCGCCGCCCAGAAGCAGTTCTCGACCGGTGGCCAGCCGGAGAACGTCAGCTCCACCAATGGACAGACAGAGGCGGAATCAGAGAACGACCCCCTAAACTAcagtatggaggagaccaaTAAGATCCGGGAACAGTTGGGGATGAAGCCTATTCCTAGAGACAAGTTCTCCTCCCCATCACCTCGACCTGCAGCTAGGAAGTCCCACACTCTGGAGGCAGTGCTGATGCTGTTGAAAgatctggaggaggaggagctacGCATCGTTCACATGGCAACCCAGAACAGACAGCTtcgatcacacacacaccccaagctcacacacacactgcagggagATGGAaccatcgacacacacacactgcagggagATGGAaccatcgacacacacacactgcagggagATGGAaccatcgacacacacacactgcagggagATGGAaccatcgacacacacacactgacaaactcCAGAGAGAGAACGACCGACATcgagcactgacacacacacactgactttaAACACTAACGCAACCACCCAACACTGAGGTAGACACACAAGTCATGTTTATGCTCCGTGaccagagggagaggtaagggtTCACATgctcccctaggtacagatctaggatcagcttcccctcccccaatcctaaccttcaCCATTAGTGGGGGGAAATGCAAAACggacccaagatcagcgtctagggaCTTTACCCTACTCCAGGCTCACACACCCACCAAACCTTGGTACACACAGGCTTCAGTATTGTTGTGACAGGCTTTTAGCCAAATAGAGGAGACTGAAGGGAGAAGTCAGAGCTAATCGTTGTCGCTATCTATTCTCTAGCAGCATGTCGCTATCTATTTCCTAGCAGCATGTCGCTATCAATTCACTAGCAGCGCGTCGTTATCAATTCCCTAGCAGCATTTCGCTATCAATTCACTAGCAGCGGGTCGCTATCAATTCACTAGCAGCGCGTCGTTATCAATTCCCTAGCAGCATGTCGTTATCAATTCACTAGCAGCGCGTCGTTATCAATTCACTAGCAGCGCGTCGCTATCAATTCCCTAGCAGCATGGCGCTATCAATTCCCTAGCAGCACGTCGCTATCAAATCCCTAGCAGCATTTCGCTATCAAATCCCTAGCAGCGCGTCGCTATCAAATCCCTAGCAGCGCGTCGCTATCAAATCCCTAGCAGCGCGTCGCTATCTATTCTCTAGCAGCGCGTCGCTATCTATTCTCTAGCAGCGCGTCGCTATCTATTCTCTAGCAGCGCGTCGCTATCTATTCTCTAGCAGCGCGTCGCTATCTATTCTCTAGCAGCGCGTCGCTATCTATTCTCTAGCAGCGCGTCGCTATCTGCCTTTCCTTAATCAGTGAATGGTGTTTTTGCAAACTGCTTTGTGTTAATAAAGAGACACTTtaatgcataaaaaaaaaaaaaactaaatttaaGAGTTGACAACATACATGCATACAACAGTTTATGTACACTGAACCAAAacatatataaatgcaacatgtaaagtgttggtcccatgtttaatgagctgaaataaaagatcccagacattttccatacgta

Function

GO: NA

KEGG:

id description
K23456 CFAP410, C21ORF2; cilla- and flagella-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445567 lncRNA downstream 19676 42339661 ~ 42341071 (-) True G2138287
TU2445594 lncRNA downstream 35981 42324317 ~ 42324766 (-) True G2138313
TU2445059 lncRNA downstream 72418 42288008 ~ 42288329 (-) True G2137877
TU2445056 lncRNA downstream 74141 42286403 ~ 42286606 (-) True G2137874
TU2445055 lncRNA downstream 76369 42284163 ~ 42284378 (-) True G2137873
TU2445563 lncRNA upstream 104 42368244 ~ 42385423 (-) False G2138286
TU2445565 lncRNA upstream 104 42368244 ~ 42385423 (-) True G2138286
TU2445642 lncRNA upstream 63149 42431289 ~ 42431644 (-) True G2138348
TU2445653 lncRNA upstream 92289 42460429 ~ 42461528 (-) True G2138358
TU2445662 lncRNA upstream 107330 42475470 ~ 42475859 (-) True G2138366
XM_036966151.1 mRNA downstream 223383 41906782 ~ 42137364 (-) True LOC110508267
XM_036966905.1 mRNA downstream 719581 41630582 ~ 41641166 (-) False LOC110509166
XM_036966906.1 mRNA downstream 719581 41630582 ~ 41641166 (-) False LOC110509166
XM_036966907.1 mRNA downstream 724568 41630582 ~ 41636179 (-) False LOC110509166
XM_036967120.1 mRNA downstream 733907 41587299 ~ 41626840 (-) False znf414
XR_005040199.1 mRNA upstream 1725 42369865 ~ 42370321 (-) False LOC118944818
XR_005040198.1 mRNA upstream 1725 42369865 ~ 42370480 (-) True LOC118944818
XM_036966738.1 mRNA upstream 32375 42400515 ~ 42405657 (-) False LOC110509173
XM_036966736.1 mRNA upstream 32375 42400515 ~ 42410701 (-) False LOC110509173
XM_036966737.1 mRNA upstream 32375 42400515 ~ 42410701 (-) True LOC110509173
TU2445575 other downstream 9295 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 133782 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 134383 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 546546 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 624358 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 1006607 43374747 ~ 43375558 (-) True emilin2a

Expression Profile