RNA id: XM_036965945.1



Basic Information


Item Value
RNA id XM_036965945.1
length 1791
RNA type mRNA
GC content 0.47
exon number 5
gene id them6
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42498283 ~ 42508205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCCGATAAACCCCACCGAAGAAGACGGAATACTGCTTAGTGATTTCAACGCATACGTCGGAGCTCCGGTATCAAATGTAACATAACTATTTAAACATTTAGAATAGGTTTTACTTGACTTGGGAAGTTGTGAATTCCACACGTGACTGATTTTTTTTGTCGAGGGAGAGTGACAGCTACACAGATTTGTTTGATAAATATATCCTCTTCAAATCTATTTCTGTAATTGTTTCTCAGCGGAACTGCAGCCCGGAGTTTCAGGATAAGACGGTGAACGTGCAGTGTTGATTTCGGACAACAACTTTCTGATCAAAACAGTCAGgGAGATGTTACTGTGGGTGTTAGgggtgttgctgctgctgttctcCTGTCTGGATGTGTGGTACTTCGTGCGTGCGGCGGTCACGGTGGTCAGGGCCTGGTTCCAGAAGCCGGTGTGGGACGTCCTGGGGGAACAGAGTGTGTCGGGACGCGTCCTGCTTCACGATATCGACCTGGGACACATGAACAATGCCAGATACCTCCGGGAGTGTGACTTCGCCAGGTTCTCCCTGTACAGTCGTAACGGGGTGTTTAAAGCCTGCAGAGCCCTGAGGGCCACCATGGTGGTGGGGGCCACTACTATCCGCCTGCGCCGGGCCCTGTGCCTGGGGGAAGCATTTGAGCTGCGCACCAGAATCATGGTCTGGGATGAGAAGGCCTTTTACCTAGAGCAGCGTTTCGTCTCCTGCAGGGACGGTCTGGTGGCAGCTGTCATGTTGTGTAAACAGAACGTCATGCGCAGCAGTCCTGACAAGATCCTACAGTTCCTCTGCAAGAGAAAAgtGGAGTGTCCCGACTACCCTGAGGATCTGCAGCACTGGATCAGCTTCATCTCAGCCAGCAGCCAGGCCCTGAGAGCCCAGAGTGGACTAGAGGACAAGACTGGAGCGCAGGAAGACAAAGACAAGTGATTGAGTGCTGTGCTGTTGTCGACGATATGGGAGCATGAAGGCTCTCTCTGACagatctggggtgtattcattagtgtcAACTGTAGGAAAACGTTTCTCATTTGAAAATACGAGTTACTATTAGATTAATGTAGGTAGGTTTGttccgtttggttcctagtgaatacacccaaGCTTCAGACTGCTGGACGCTCTATCTCTTCCACTCTGACCTCCTGCTGactaaggctgcgtttacacaggcagcccaattctgatattttttgccactaattggtcttttgaccaatcatatATTTTCACATCAGAAATGTTTCGGAGCTGATCagatttgggctgcctgtgtaaacacagcccaTGAGACTTCACTTCACTGGTGCCTTCTCTCTTCTAGGCCCAGTCCCAAATGGACCATACGCCATAtgtacttgtggagatctgagagaatTTGATTGGTATAAGCGATACGGTGAAACTTCTACCGAGCCTATCAAAGTGGAAGTTGGATCCATTTCCATATCGATTGCATCTGACCAATCATCTCACATCTGTACTAGGGCGTAGGGTCCGTTGTGGGACTGGACCTAGAGTCAAATAGGACAGACCTGTCTATCGACCCTCTGCTGTATCCTGGATACTCCTTGTGGAGGGTGGCATGCACAACGGTCTGTTACTACTGACCATTCCATATAGGAATTGGAACATAGGAATCTATAGGAAAGAGGTCAAATGAATTCATctatattttctatgttgtaaaataaaaatcaattgatttgagtttgtttgtttgtttgttatagGCTTACTTAATAAAGATCTCCTGATAAAATGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2445663 lncRNA downstream 20640 42476443 ~ 42477643 (-) True G2138367
TU2445662 lncRNA downstream 22424 42475470 ~ 42475859 (-) True G2138366
TU2445653 lncRNA downstream 36755 42460429 ~ 42461528 (-) True G2138358
TU2445642 lncRNA downstream 66639 42431289 ~ 42431644 (-) True G2138348
TU2445563 lncRNA downstream 112860 42368244 ~ 42385423 (-) False G2138286
TU2445686 lncRNA upstream 14182 42522314 ~ 42522784 (-) True G2138386
TU2445727 lncRNA upstream 91549 42599681 ~ 42600138 (-) True G2138414
TU2445734 lncRNA upstream 102925 42611057 ~ 42615032 (-) True G2138420
TU2445761 lncRNA upstream 115158 42623290 ~ 42625470 (-) False G2138424
TU2445756 lncRNA upstream 115208 42623340 ~ 42625470 (-) False G2138424
XM_036965943.1 mRNA downstream 4446 42471891 ~ 42493837 (-) True LOC110509174
XM_036966736.1 mRNA downstream 87582 42400515 ~ 42410701 (-) False LOC110509173
XM_036966737.1 mRNA downstream 87582 42400515 ~ 42410701 (-) True LOC110509173
XM_036966738.1 mRNA downstream 92626 42400515 ~ 42405657 (-) False LOC110509173
XR_005040198.1 mRNA downstream 127803 42369865 ~ 42370480 (-) True LOC118944818
XM_036966602.1 mRNA upstream 122013 42630145 ~ 42691448 (-) False LOC110508271
XM_036966601.1 mRNA upstream 122013 42630145 ~ 42703120 (-) False LOC110508271
XM_036966603.1 mRNA upstream 122013 42630145 ~ 42703120 (-) False LOC110508271
XM_036967019.1 mRNA upstream 225511 42733643 ~ 42772837 (-) False LOC110509177
XM_036967020.1 mRNA upstream 225511 42733643 ~ 42772837 (-) False LOC110509177
TU2445575 other downstream 146831 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 271318 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 271919 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 684082 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 761894 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 866615 43374747 ~ 43375558 (-) True emilin2a

Expression Profile


XM_036965945.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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XM_036965945.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036965945.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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