RNA id: XM_036966603.1


Basic Information

Item Value
RNA id XM_036966603.1
length 2257
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC110508271
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42625607 ~ 42703120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTCCGCAACACCGCTGCCCTAAAATACCGTATTTACATTTATGCAGCAACAAATGGGGAACTGTAGGCTACCGTAAAGATCTGAGTAGGTTGATTCTACAGTATGGGAAACCCATGGACAGACTCGCTGTGGGAACTCAGaagttgtctctgtctgtctcctgtctgtcccgCTGTCTCAGGTCTGTGAAGGTAAAGATGTCTCTGGTCGAGCTGGAGGTACCGTCTCCCCTCGTGCGCAGGAGGGTGCACGTTGAGCGCGTGCTGCGGCTGCAGTGATCAAATACCTGTCATCTCTTACTAGCTGCGCTGCGTGCTTGATATTACCGACTGAACGGAGGATTTACTGGGAACGGGAACTGAGAACATACCGGCCCAAACCCCCTCCGACTGGACACCGATGGCTTCATGACCCTCTGTGTTCTAATGACTGCTGGAGTGCAGTCGAGCTGACAGGAGCTTTTTCTGTGGATTacttggaacacacacacacacacacacacacacacacacacccttgctgTAAACCTCTCTGGTCAAGATGAGAGGCCTCCTGCTGATTACCATTCTCCTCCTGCCGGTGGTGTGCTCCATGTATTCCGAGAACTCAGACTGTGTGGTCAAAAGACAGCAGGAGAGATGTATGGAGAGGATCGCCCTGCACAACCTAACACACTACCTGGATAATGGCTGTCCGTGGATGTGGGACGACCTGGCTTGTTGGCAGGATGCAGCCGTAGGTGAAGTGGTATCAGTCAGATGTCCTGAAGTCTTTCATGACCTCCTGAGTCCTGACGATGagattGGTTGGATCAGTAGGAACTGTACAGCAGAGGGCTGGTCAGAAACATTTCCTCACTACGTTGACGCCTGTCTGTCAGACGATAACACCACCAGACCGgACATGCACTATGAGTCTGTGAAAGCTCTGTACACAGCAGGATACAGCACCTCTTTGGTCTCTCTCACCACCGCCATGACTATACTCTGCAGGTTCAGgaAGCTCCACTGTACCAGGAACTATATCCATATGAACCTGTTCGTCTCCTTCATGCTGAGAGCTATCTCTGTGTTCATCAAGGACGGGGTTCTGTACACCCAGGAGGAAGAGAACCACTGCTTCAGACACACcGTGGAGTGTAAAGCAGTCATGGTATTATTCCACTACTGTGTGATGTCCAACTACTTCTGGCTGTTCATCGAAGGCCTGTACCTCTTCACCCTGCTGGTCCAAACCTTCTTCCCAGAGAGGCGGTACTTCTACTGGTACACCGTGGTAGGGTGGGgtACTCCCACCATTTGTGTAACTGTCTGGGCTGCTCTGAGGCTTCACTTTGACGACACAAGTTGCTGGGATACCAACAACACCACTGCCCTCTGGTGGGTGATCAAGGGACCTACGGTCGTCTCCATCATGATCAACTTTGTCCTGTTTGTTGGGATCATAGTCATTCTGGTCCAGAAGCTGCAGTCTCCTGACATCAGAGGGAATGAGTCCAGTATCTACCTgCGTCTGGCTCGGTCCACCCTTTTACTCATCCCCCTCTTCGGGATCCACTACACTGTGTTTGCCTTCTCACCAGAGGACGTCAGCAAGAAGGAGAGGCTGGTGTTTGAGCTGGGCCTGGGATCTTTCCAGGGTTTTGTTGTGGCTGTCCTCTACTGTTTCCTCAATGGAGAGGTGCAGTCTGAGATCAAGAGGAAGTGGCGTAGCTGGAGGGTGAACCGGTACTTTACCGTGGATCTGAAGCATCAGCAGCGCCACCCATCCCTGGTCAGCAGCGGTGTCAACGGAGGAACACAGCTCTCCATGCTCAGTTCCAAGAGCTCCTCCGCCTTACAGATACGCATGGTGGGCCCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGGCTGAGACACCATCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACTGTCCACACTCAACCTGCCCACCTGATTGGCTGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445757 lncRNA downstream 4675 42623554 ~ 42625470 (-) False G2138424
TU2445836 lncRNA upstream 15687 42718807 ~ 42806277 (-) False G2138471
TU2445857 lncRNA upstream 33832 42736952 ~ 42737594 (-) True G2138482
TU2445868 lncRNA upstream 58754 42761874 ~ 42762340 (-) True G2138492
TU2445878 lncRNA upstream 76091 42779211 ~ 42780170 (-) True G2138502
TU2445832 lncRNA upstream 80906 42784026 ~ 42820795 (-) False G2138471
XM_021590154.2 mRNA downstream 121940 42498739 ~ 42508205 (-) True them6
XM_036965944.1 mRNA downstream 121995 42498739 ~ 42508150 (-) False them6
XM_036965945.1 mRNA downstream 122013 42498283 ~ 42508132 (-) False them6
XM_036965943.1 mRNA downstream 136308 42471891 ~ 42493837 (-) True LOC110509174
XM_036966737.1 mRNA downstream 219444 42400515 ~ 42410701 (-) True LOC110509173
XM_036967019.1 mRNA upstream 30523 42733643 ~ 42772837 (-) False LOC110509177
XM_036967020.1 mRNA upstream 30523 42733643 ~ 42772837 (-) False LOC110509177
XM_036967021.1 mRNA upstream 30523 42733643 ~ 42772837 (-) False LOC110509177
XM_036967022.1 mRNA upstream 30523 42733643 ~ 42772837 (-) False LOC110509177
XM_036967023.1 mRNA upstream 30523 42733643 ~ 42772837 (-) False LOC110509177
TU2445575 other downstream 278693 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 403180 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 403781 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 815944 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 893756 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 671627 43374747 ~ 43375558 (-) True emilin2a

Expression Profile