RNA id: TU2445751


Basic Information

Item Value
RNA id TU2445751
length 2822
lncRNA type sense_over
GC content 0.49
exon number 5
gene id LOC110508271
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42625607 ~ 42703120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTGCAGTCTGAGATCAAGAGGAAGTGGCGTAGCTGGAGGGTGAACCGGTACTTTACCGTGGATCTGAAGCATCAGCAGCGCCACCCATCCCTGGTCAGCAGCGGTGTCAACGGAGGAACACAGCTCTCCATGCTCAGTTCCAAGAGCTCCTCCGCCTTACAGATACGCATGGTGGGCCCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACCGTCCACACTCAACCTGCCCACCTGATTGTCTCAAACCCCTGGCCGAGACACTGTCCACACTCAACCTGCCCACCTGATTGGCTGAGACACCTAGCTGAGACCTCGCCCTCCCTTAAACAGAATACCTGAATTGGCTCGCCCCCCGGATTGTGTAATTGGCTCAGACCCCTCACCAACCACTTATCTTCCCAGACAATGCAGATACATGTCCTTTAGTTATCTTCAGGCCCTCTTCTTCCCAGACAATTCAGATTCATGTTATTTAGTTATCTTTAGAAAATAAGAAGAGTTGATGCTCTCTTACAAATAATATGTTCAAACATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTAATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCGCTAGCCAGGCTCTCTAATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTAATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTCCTCCCACTAGCCAGGCTCTCTAATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTAATAGAGTAACTAACTCCTCCCATTAGCCAGACTCTCTAATAGAGTAACTAACTCCTCCCACTAGCCAGACTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGACTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACGAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCATAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTCGTAGAGTAACTAACTCCTCCCACTAGCCAGGCTCTCTTATAGAGTAACTAACTCCTCCCACTAGCCAGGCTGTCTCATATAATGTGATATAAATGTATTCTTTGACATGAACAATATATTCACCAAATAATTACAAtattgtgggggaaaaaaatgtaaaatgtgaTGCCATATTGCTGACTTTTGCTGTTATTCTACATCATGTAGTGCCATACAGGTTGTCTCCTCTGAGGTCGTGACCTGACACAGAgccatatatagagagagagaccaaccagATATCTATAGCTCTGATATGACcaggatccagagagagagaccaaccagATCTCTATAGCTCTGATATGACCAGGATCCAGAGAGAGACCAACCAGATATCTATAGCTCTGATATGACcaggatccagagagagagaccaaccagATCTCTATAGCTCTGATATGACCAGgatccagagagagacaaacCAGATCTCTCTAGCTCTGATATGACCAGGATCCAGAGAGAGACCAACCAGATCTCTATAGCTCTGATATGACCAGGATCCAGAGAGAGACCAACCAGATCTCTATAGCTCTGATATGACCAGGATCCAGAGAGAGACCAACCAGATCTCTATAGCTCTGATATGACcaggatccagagagagagaccaaccagATCTCTATAGCTCTGATATGACcaggatccagagagagagaccaaccagATCTCAGACATGTCTGTAAAACGCTTCAGTAACTATTTTAACGTAGATGTTTTATGTCTTTGAAAAATAAGGTGGTGAAATGTGGTCCTTTATTTTCTATATCAGCCATCGGTACACAGTATGTCAACACAATGAAAACAGCTCATGGTTCAATGtggacaaaatattaggaacacctgctctttccatgacagactgaccaggtgaatccaggtgaa

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445757 lncRNA downstream 137 42623554 ~ 42625470 (-) False G2138424
TU2445791 lncRNA upstream 13798 42644518 ~ 42645096 (-) True G2138439
TU2445793 lncRNA upstream 17702 42648422 ~ 42648758 (-) True G2138441
TU2445836 lncRNA upstream 88087 42718807 ~ 42806277 (-) False G2138471
TU2445857 lncRNA upstream 106232 42736952 ~ 42737594 (-) True G2138482
TU2445868 lncRNA upstream 131154 42761874 ~ 42762340 (-) True G2138492
XM_021590154.2 mRNA downstream 117402 42498739 ~ 42508205 (-) True them6
XM_036965944.1 mRNA downstream 117457 42498739 ~ 42508150 (-) False them6
XM_036965945.1 mRNA downstream 117475 42498283 ~ 42508132 (-) False them6
XM_036965943.1 mRNA downstream 131770 42471891 ~ 42493837 (-) True LOC110509174
XM_036966737.1 mRNA downstream 214906 42400515 ~ 42410701 (-) True LOC110509173
XM_036967019.1 mRNA upstream 102923 42733643 ~ 42772837 (-) False LOC110509177
XM_036967020.1 mRNA upstream 102923 42733643 ~ 42772837 (-) False LOC110509177
XM_036967021.1 mRNA upstream 102923 42733643 ~ 42772837 (-) False LOC110509177
XM_036967022.1 mRNA upstream 102923 42733643 ~ 42772837 (-) False LOC110509177
XM_036967023.1 mRNA upstream 102923 42733643 ~ 42772837 (-) False LOC110509177
TU2445575 other downstream 274155 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 398642 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 399243 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 811406 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 889218 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 744027 43374747 ~ 43375558 (-) True emilin2a

Expression Profile