RNA id: XR_005040294.1


Basic Information

Item Value
RNA id XR_005040294.1
length 3463
RNA type mRNA
GC content 0.55
exon number 18
gene id LOC110509177
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42733643 ~ 42772837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccccccccccccccccccccccatccttacTACTGATCTCAGCACCACCATCATGTGTAACAAGACATCAGTAGGAGAGAACCAACTCCAGAGGATTATCAGAGATCTACACGAAGCAGTGACTGAGCTGAGTAAGGAACATAGAGAGATGGGTGAACCAATCACAGACGACAGCCCCAACCTGCATAAACTGTCCTACAAACTAGAGTACCTGCTACAGTTTGACCAGAAGGAGAAGGCAGATTTCCTAGGCAGCAGGAAGGAGTACTGGGATTACTTCAGAGAGTGTCTTGCCAAGACCAGAGGAGTTAATGACGGCCTGCGGTTTGTCAAGGCTATACCAGAGTTAAAGACGTCCCTGGGTAAAGGTAGAGCGTTTCTCCGCTATTCTCTGGTCCATCAGCGTCTGGCTGATACCCTACAACAGTGTCTACTCAACCACAAGgttaccagtgagTGGTACTTTGCTCGCAGTCCCTTCCTGAAGTCTCACCTCAGCAGTGACATCATCAGTCACCTGTATGTTCTCAACGAGGTCCAGTTTGATGTGGCATCCAGAGGTCACGACCTCGATGCTGATTGGCCCACATTCGCCAGagacattcttccgaGGACAGGAAGATCTCTGTTGGCCAACACGGCCAGCATCTATGACCAACCtcccgaagcgcagctcagaccagggttcgtgaagataaccaagaattctaGGACTTCaaatgagactgaaataagGAGGACTCTGGGGTCTAACTCCGCCCACCTCTGGAAACCTTCCAGTCGCTGTTCCAGTGTCAACAGCCTGGTCAGCTACTCAGGGTTGCAGGAGTTCAAAGCTCAAGAATACGGTTCCAGTTTGCTGGCTGACCTGGGGGaggagttaggggagctgggggAGGAGCTACTTGGAGTCTCCACACCCTGCACTGCCGCAGACGACCTACGCATCCTGGTTGACCATTCAGAGCTCAGACAGCAGGAGCTGCTGCACCAATCAGAGGCGAGACAGGCAAAATTGTTACAGCGAGTCAGAGAGCTAGACCAGGAGGCAGAGGGGCTGAGGAACGAGGTCAGAGAGCTGCAGGGGAAGCTATTGGCTCACAACCAGGAAGCTGTGACAGCCAACCTCAACAACATGGATCTGTTGTCTAAACTAGACAGCCAGgagaaggagagggactcAACGCTACCACAGACCCAGGttctggaggagggagaggagagggacgcaGCGCTACAACAGACCCAGGTTctgcaggagggagaggagagggacgcaGCGCTACAACAGACCCAGGTTCtgcaggatggagaggagagggacgcaGCGCTACAACAGACCCAGGTtctgcaggaggaggagagggaggtgcaggagaagagggagatgcaggaggagaaggagggagaggagaggaaggagaagagggaggtgcaggaggagagggaggtgcagGAGTGGAAGGCCATGGAGAAGCAGCTTCAGGAGTTGAGGAAGGAGCTGAGGTCCAGGGACAGAGAACTGACGGAGAGTAGAGAAAAGATCAGACAATTGGAGGAGGAGaacactgacagactgactggggcggggcaggagagagagaagggagagatggatggagagaaggagaagctagggacagagaaagagactgcAGAGTGTTCTCATAGTAATCTACATAAGGCTGGTTCTGCAGAGGGACTGTCTATGGAGAAGAACCAGCATCTTTCCTCTAAGTCTGAGCCCCAGATGCAGgacctctccccctgtccccagACCCAGCAGCTCCTCCTCCCGGCTGTGTTGGTGGCCCAGCTGCAGCGTAGCCAGGGGGAAGTGCTACGGCTGCAGACGGAGGTTGTGGAGCTGAGAGCCTGGCTGCAGCTGGGAGCAGAGCTGCAGATAAGGAGTCAGGTGGAGGGGCTCAACAGACAGCAGGTAGAGGAGCTGCTGCTGgcccaggagagggaggaggctcTGGGGCAGGAGCAGCGCCGCAAGGCTCAGGCTTCACAAGGCCTAGTCCTGGAGCTGGCCTCCGCCAGGGAGGAACTCCACAACCTGAAGACACGCTACGAGGGTCTGGCCCTGGAGCATGGAGACATCCGGGAGGCCCTGGACCACGCCAACAGAGAGACAGCAGAGCTCGGGTTCCACATATGCAGGCTTACTGCCCAGAATGAGGAAGCGCGAGAGCGATGGGATGCGCTGTCCAACAGGTTTCAGGAGGAGCTGAACACCAGCATGACCTCCCTGCAGCAGGAAAACCTCGGCCTGCAGGAGCAGCTGCTGAAGGAgcgggaggagaaggggaggctgGGGAAAGAAGAGCAAGGAAAGGTCAGGGCTCAGAAGGAGGCACAGCAGGAGGAGATCCAGGCGCTCCGCTATCAGCTCAGCAACCAGACCATAAACCACCAGACACAGTTACAGGTTCTGTCTGAAGAGCTGAAGACTGTGAGGTCTGAAGTGGAGGTGGAACAGGAGAATAATTTATACCTGAAGACCAAACTGGAGGAGATGGAGCGTGACAAGCAGGACTATCATCAACCTCTAGAGGACAACACATCACAGAAGctaatacaacagagagaggaggagatgcaaCACAACCTCACCAGGAGTGAAGAGAGCCTGGTTGTGTCTCAGAGGTCCTGTGAGGAGCTGAGGGAGGGACTACGGAAAGCCTGTCAGGACAAACAGAGCTATGAGCTCCGGACCTCAGCTGAACTGGATGACCTCTACCGCACCAAAATCAATCTGGAGGAAAGACTCATAGAACTCATCAGGGAGAAGGATGCCTTGTGGCAGAAGTCTGATGCTCTGGAGTTTGAGCAGAAGCTGAGAGCGGAAGAGCAGACAAAGAGAGATACCTGTAGCAAtacctctcactgtctctcctgcagcagtCCATTCAGCTGGTGGCTTCATAGACACACCTGCAGACTGTGTGGCCATGGgttctgctactactgctgcagTAACACCGTCAGCCTGATGGAGGGGGGCGCCAGAGAGCGCTGCTGCTCAGTCTGCTACAGCCAGCACAGTGCTGTGGTAGAGCGCCATCCTCAGGAAGACACCTGTACTGCACCACACACACCCTTCAACCCTCTGCCCCAACCTGGGGGCAGCAGagctCAACGGTGGTGCCAGTACAGCAGAAACCACATCAGAGGACCTACCTGACCAGACTGGAGCTGTTCAGGATGCAGAGATCTGTCTGCTGAGGAGTGGAGAACTCACgttgCGTGTTCCGTTCAGTGTGGAGGAGATCAGTGTATTTGGTGACAGTCTGAGGGAGCTGTTCATCAGGTCTGGTTGTTACAGCTCCATCCCCATTACTGGGTCTACCCTTGGTGCTACCATACACTGGCTGTTCACCTCACAACCCAAGAGCATCTCATTTAGTGTGCTGTacagagaggacacacacacacctctggagGAGGCTAAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2445857 lncRNA downstream 256 42736952 ~ 42737594 (-) True G2138482
TU2445793 lncRNA downstream 89092 42648422 ~ 42648758 (-) True G2138441
TU2445791 lncRNA downstream 92754 42644518 ~ 42645096 (-) True G2138439
TU2445748 lncRNA downstream 107130 42625607 ~ 42630720 (-) False LOC110508271
TU2445751 lncRNA downstream 107130 42625607 ~ 42630720 (-) True LOC110508271
TU2445878 lncRNA upstream 6374 42779211 ~ 42780170 (-) True G2138502
TU2445832 lncRNA upstream 11189 42784026 ~ 42820795 (-) False G2138471
TU2445841 lncRNA upstream 17134 42789971 ~ 42806277 (-) False G2138471
TU2445830 lncRNA upstream 17630 42790467 ~ 42813517 (-) False G2138471
TU2445842 lncRNA upstream 17630 42790467 ~ 42796052 (-) False G2138471
XM_036966601.1 mRNA downstream 34730 42630145 ~ 42703120 (-) False LOC110508271
XM_036966603.1 mRNA downstream 34730 42630145 ~ 42703120 (-) False LOC110508271
XM_036966602.1 mRNA downstream 46402 42630145 ~ 42691448 (-) False LOC110508271
XM_021590154.2 mRNA downstream 229645 42498739 ~ 42508205 (-) True them6
XM_036965944.1 mRNA downstream 229700 42498739 ~ 42508150 (-) False them6
XM_036967030.1 mRNA upstream 104659 42877496 ~ 42959408 (-) True LOC110508296
XM_036967031.1 mRNA upstream 200518 42973355 ~ 42987359 (-) True LOC110509179
XM_036966351.1 mRNA upstream 268385 43041222 ~ 43077460 (-) True LOC118944838
XM_036966530.1 mRNA upstream 570694 43343531 ~ 43398034 (-) False emilin2a
TU2445575 other downstream 386398 42349216 ~ 42351452 (-) True G2138294
TU2444991 other downstream 510885 42220922 ~ 42226965 (-) False G2137814
TU2444984 other downstream 511486 42220922 ~ 42226364 (-) False G2137814
TU2444782 other downstream 923649 41810795 ~ 41814201 (-) True G2137648
TU2444670 other downstream 1001461 41731714 ~ 41736389 (-) True G2137555
TU2446193 other upstream 601910 43374747 ~ 43375558 (-) True emilin2a

Expression Profile