RNA id: TU2395916


Basic Information

Item Value
RNA id TU2395916
length 213
lncRNA type inter_gene
GC content 0.65
exon number 1
gene id G2094523
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 1977359 ~ 1977571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCCGTGGATCCAGCATCAGTGGTGGCTCTGGTGCCGGACTTTGCCCCCACCCAGACCACAGGTCTGGCCATGGAGCCGGACtgaggaggcgcactggaggcctagtgcgtggagtcggcacaggtggcaccggactggtgacacacacCTCAAGGCGAGTgcggagagctggcacaggacgtacagggctggggaggagtactggagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2395912 lncRNA upstream 1027 1976126 ~ 1976332 (+) True G2094519
TU2395285 lncRNA upstream 280873 1684106 ~ 1696486 (+) False G2093960
TU2395276 lncRNA upstream 282890 1684106 ~ 1694469 (+) False G2093960
TU2395989 lncRNA downstream 99173 2076744 ~ 2077032 (+) True G2094595
TU2395993 lncRNA downstream 107410 2084981 ~ 2085229 (+) True G2094599
TU2396019 lncRNA downstream 227215 2204786 ~ 2207029 (+) True G2094624
TU2396141 lncRNA downstream 387616 2365187 ~ 2367680 (+) True G2094739
TU2396232 lncRNA downstream 490310 2467881 ~ 2476225 (+) True G2094821
XM_036966659.1 mRNA upstream 58972 1865400 ~ 1918387 (+) False LOC110508334
XM_036967070.1 mRNA downstream 116505 2094076 ~ 2190557 (+) False LOC110509192
XM_021588787.2 mRNA downstream 482061 2459632 ~ 2464135 (+) True LOC110508337
XM_021588789.2 mRNA downstream 500187 2477758 ~ 2483196 (+) False LOC110508340
XM_021588790.2 mRNA downstream 500187 2477758 ~ 2483196 (+) True LOC110508340
XR_005040195.1 mRNA downstream 519158 2496729 ~ 2508118 (+) True LOC118944816
TU2395274 other upstream 282890 1684106 ~ 1694469 (+) False G2093960
TU2395279 other upstream 282890 1684106 ~ 1694469 (+) False G2093960
TU2395198 other upstream 531238 1444633 ~ 1446121 (+) True G2093889
TU2393761 other upstream 1282701 694133 ~ 694658 (+) True G2092558
TU2396000 other downstream 116573 2094144 ~ 2177613 (+) False LOC110509192
TU2395999 other downstream 200113 2177684 ~ 2183618 (+) True LOC110509192
TU2396296 other downstream 676292 2653863 ~ 2655091 (+) True G2094884
TU2396861 other downstream 923279 2900850 ~ 2907205 (+) False yeats2
TU2397376 other downstream 1363613 3341184 ~ 3341519 (+) True G2095895

Expression Profile