RNA id: TU2396019


Basic Information

Item Value
RNA id TU2396019
length 2215
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2094624
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 2204786 ~ 2207029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCAATGGAGGCCTTTATTCCAATTAAACAAAGAAGTCATGAACAGCAGTTAGTTTGGAAAATAATTACATTCAAAATGTGCCACTTACCAAAAATACAGCTAAACTTTTAAAACCGCAGTTCATATAATAGTTCTAGGTTTGTgaaattccagtaactttccccAAACTCCCAGGCTTTCCAACAATCCTAGTTTGAATGTTCCCGGAATCAGGAGGAAATAGCTGAATATCCAGAGAATCCTCCCAACAGGGATTTCtgaaaaacctgggaattttagGAAAGTTACCAGAATTGTTCAACCCTAAACAGATCATATGATTTTGGTGGAATGGGTCTTAAATAAACATGTTTGTTTCCTCAAGTTTCTAATGTTCACCATAAAGTCGTACTTTAATTACTATCAGACATCTGTACAACATACTTCCTGTCCATCAGTcccctgtccacacacacacattcacacgttgtttatatttattttcttaAATGTTGCTTGGCTTATTATAATACATTTACAACCAGTCCAAAGATATACACATCTCAGTACCATTTCTGTGTTTTTAAGTTATCTGACTGATAGGAGCGGACTTGTTCTAAAAACCAGAGAAGCAGAGTAGTTTTGGTATGAATATGGCTGAAGAAAAACCATGAGTCAGTtggagcatcccaaatggcaccctagtgcctacatagagcactacctTTGAGTAGTGTAAAACGGACTGCTTCCAGtatctccagagagagagagagaaagagagaaagagagaaaagaagtGTGTATATTAGAGGATATTGGTCATTTCTGATGCGTGCTGGGGCCTTTACACAGGCACGCAAgcgcacacacaaatgcacgcacacacagggcTGTATTAGGAGGTAAGAGTCTACCATATAGCTCATTACATGACATACAGGTACATAATGGGCTGCGTatctaatggcaccctataccctatatagtgcactacttttgatgatgCACTAGATAGAGAGtagagtaccatttgggacgcaagtaCACTCTCCCAGCTCTGTACTttagaaacagcagagggagacaaaGCCACTTTATTTACAGACATTCATTGATTCTCTAGTTGAGCCCACAGAGAGAAGAGGTGCCTGAACGAACAGCATATAGAAAATAAAGGTAAGGTAAGTATTTTCCCCTATATAGCTCAGCATTTTCATTTtggaccaaggcccatagggctctgttcagaAGTTGTTTTGGGACGCCGACATTGTGTTGGTAGAGGAGCTGAAGGTGTCCCAGCAAACAGAGAGACCAagcaagagacagacagacctctctaTACGGTCTGGTCTGTATGTCCTTAACAggtaaatatactgtacagtgtaggctaaatactgtTTAGTGCAGCCAGAATAGTGGATCGATAGACCCTCCCCCTGCAATACTGACGCCACTGTTGGGAGACTGAGGTTACTGAGGCCTGCCTGACAGACCCACCTTTCCTGAACATATCAAGGTTGTTACTCCACCCTAACCATAATATAGTGTCTGTCCTCTCTTCAACGCTCCATCCGGACAGTATCCTCCATTCGGCCAGTCTATCCAGACGAGAGGCTAACTCAGGTACTGGGCCATGGAAATCCAGTGTATGGACAGAAGTGGATTTTTGTCTTTGGCAGTAAGTGCCACAAATCcagaagaggaggggggaagcACACATGTTTGCAGCCAAGTGCAAAGAGTCTCAACTTGGTTGGTTTATTGGTCGTGGATAATAAGTCCACCTTTGTTTTTTACCATGTATCCATACAGGTCTGGTCTGTGGGGGATGGAATCTGAGGTGTGCTGTGAATGACCACGGGTTAGAGGAAGAAGAGGCTTGGGATTGGTCTGGGTTGAGAGCTCTGTTTGgtcatggtggtggtgttgttcaGAGAGTAGGCCGGGGTTGTATTCATTACCATAGACCGTAACAAACACTGATCCTGGGTCAGTTTGGCATTCTCCCCaccaatggttaaggttaggattgggcgAGCGTAAGTCTCTCCTCTGGTTTCTACCTAAAGATACCCTCATACTCCAGCAGGATGAGCTCCACTATCTGGTTCTGATAGACCATGTGGACTGCCATGTTCCAGGTCTCTGTCTCGGGTCTGAGCAGGGTGGGGCCAAACACTATGGCTACGCTCTGGGTCGTCATACGGTTCTCCTCGCCATGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2395993 lncRNA upstream 119557 2084981 ~ 2085229 (+) True G2094599
TU2395989 lncRNA upstream 127754 2076744 ~ 2077032 (+) True G2094595
TU2395916 lncRNA upstream 227215 1977359 ~ 1977571 (+) True G2094523
TU2395912 lncRNA upstream 228454 1976126 ~ 1976332 (+) True G2094519
TU2395285 lncRNA upstream 508300 1684106 ~ 1696486 (+) False G2093960
TU2396141 lncRNA downstream 158158 2365187 ~ 2367680 (+) True G2094739
TU2396232 lncRNA downstream 260852 2467881 ~ 2476225 (+) True G2094821
TU2396206 lncRNA downstream 317293 2524322 ~ 2528240 (+) True LOC110508342
TU2396253 lncRNA downstream 324621 2531650 ~ 2531958 (+) True G2094841
TU2396208 lncRNA downstream 368332 2575361 ~ 2579828 (+) True G2094799
XM_036967070.1 mRNA upstream 14229 2094076 ~ 2190557 (+) False LOC110509192
XM_036966659.1 mRNA upstream 286399 1865400 ~ 1918387 (+) False LOC110508334
XM_021588787.2 mRNA downstream 252603 2459632 ~ 2464135 (+) True LOC110508337
XM_021588789.2 mRNA downstream 270729 2477758 ~ 2483196 (+) False LOC110508340
XM_021588790.2 mRNA downstream 270729 2477758 ~ 2483196 (+) True LOC110508340
XR_005040195.1 mRNA downstream 289700 2496729 ~ 2508118 (+) True LOC118944816
XM_036967000.1 mRNA downstream 315805 2522834 ~ 2628565 (+) False LOC110508342
TU2395999 other upstream 21168 2177684 ~ 2183618 (+) True LOC110509192
TU2396000 other upstream 27173 2094144 ~ 2177613 (+) False LOC110509192
TU2395274 other upstream 510317 1684106 ~ 1694469 (+) False G2093960
TU2395279 other upstream 510317 1684106 ~ 1694469 (+) False G2093960
TU2395198 other upstream 758665 1444633 ~ 1446121 (+) True G2093889
TU2396296 other downstream 446834 2653863 ~ 2655091 (+) True G2094884
TU2396861 other downstream 693821 2900850 ~ 2907205 (+) False yeats2
TU2397376 other downstream 1134155 3341184 ~ 3341519 (+) True G2095895
TU2398082 other downstream 1680351 3887380 ~ 3907871 (+) True G2096475
TU2398079 other downstream 1692557 3899586 ~ 3917985 (+) True G2096472

Expression Profile