RNA id: TCONS_00055538


Basic Information

Item Value
RNA id TCONS_00055538
length 1627
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_028638
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14188327 ~ 14192254 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACAGGGAACTGGAGCATTTTACTAATAAACTGAAGGTAAAACCCTGTTCAGATGATCAAGAAAAGGTGGAACTGTCATTGGGAACTTTTCCTGATAAACACATGAGAGCTGTGGTCCACAAAGCGAGAACGATGGCAGACTGTCAAATGCAGGAGGAGAGTTTATACACGGCTTTTACTCTTCGGAAGGAGAACCTGGAGACTCTGGAGGCCATCAGCTACATGGCTGCAGTACTCGGAGTGCTTCCCTCTGATTTCACTTATGCAGGAATTAAAGACAAGAGAGCCATTACTTACCAGGCCATGGTAGTGAAAAAGATCTCTCCAGAGCGGTTGCTGGAGAAAGGCTCAGAGTTTGAGAGGAGGGGAATGGAGATCTCTCGTGTCCGTCCTGCGTTTGAAGCTCTTAAGCTTGGAAGACTGCAGGGAAATCACTTTGAGCTGGTCATCAGAGACCTGAAGCATCATGGGAAACATGGTCTTGCAGAGCTGCCAAAGGTTATAGAGGAAGCAGTGGAAAATGTGaagAACAAAGGCTTTGTGAATTATTACGGTCCTCAGCGGTTTGGAAGTGGTTCGTGTGTCCAAGCAGATCAAGTAGGGCTTGCGCTGTTGAAGGAGAATATGGAGGCTTCAGTTAAGCTGTTCTTCACCCCAGAGGATGACGATGACCTCCAGAACAAAGCTAAACGTCATTTTCTGCACACAGGGAATGCCAAGGAGAGCTTGGTGCTGATGCCAGCGTATAAAGCCAGAGAGCGGCTCATGCTGCGGGCGCTCCACCGGTACGGCAGTGGACAGGAGGGTTGCACTCGTGGCTGGCTCAGTTTACCCCACAGCATGAGGGTCTTCTACCTTCACTCCTACTGCAGCAGAGTGTGGAACCAAGCAGCCAAATACCGGCTGCAAAAACTGGGCTTTAAGCCTGTTCAGGGCGATCTGGTTTGGGCTGAGCCTGTAAAAGGGCTCAAAGATGCCACAGAGGAGCTCAGTGCTCCACAGATCCATGTTGTGACTTCAGATGAGGAGAAGAATGAGGTTTTCTCATTAGATCAGGTGATTCTTCCTATGCCAGGAAATAGTGTCAAGTATCCAGAAAACCTTTTGGGTCAATGGTATCAAGACCGATTGGCTCAAGACGGTTTGGAGTCCTGCCGATTCAGAGTGACTCCCCTTAAACTCAACGTCCCTGGATGTTATCGACCCCTGCTCGCTAAGCCACAGAACATCACATATAGCCTGCAGACGAGTTCATCAGACGAGTCTAACACACACTGTCTGTCACTAAACTTTGACCTGGAGGCGTCCTGCTACGCTACTGTGTGTCTCGGAGAGATTATGAAGACTAATCTTTCATAGGTTACTCAATGACACTGATTAAAAGTGTTTAGAGACTAAAAAACGTCAAATATGAGgagctgtatttttattaaaaagtttatttacaaTTGTCATGATGATTGTGTTTTTTACCTTACCTGCAACAATATTCCActcatttgtttgtgaatgagctGTAATTTCAGCATTGAGCACTAGATGTCTCTCTCAGGTTCAGCTCAGAAGCAGTTGGACTGATGAACCCTAAAGGATCTGCCAGCTGTGTTCAATGAATCACAAGCTCAT

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function
GO:0016853 isomerase activity molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-188 Predicted to enable pseudouridine synthase activity. Predicted to be involved in pseudouridine synthesis. Predicted to act upstream of or within RNA modification. Predicted to be active in nucleus. Orthologous to human PUS7L (pseudouridine synthase 7 like).

Ensembl:

ensembl_id ENSDART00000147928

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055535 lncRNA downstream 1598 14174239 ~ 14186729 (-) True XLOC_028635
TCONS_00058140 lncRNA downstream 1604 14174239 ~ 14186723 (-) False XLOC_028635
TCONS_00058139 lncRNA downstream 17921 14168122 ~ 14170406 (-) True XLOC_028633
TCONS_00058138 lncRNA downstream 26000 14157978 ~ 14162327 (-) False XLOC_028632
TCONS_00055532 lncRNA downstream 26000 14157978 ~ 14162327 (-) True XLOC_028632
TCONS_00058141 lncRNA upstream 155150 14346867 ~ 14360848 (-) True XLOC_028641
TCONS_00058142 lncRNA upstream 239246 14430963 ~ 14444890 (-) False XLOC_028642
TCONS_00058143 lncRNA upstream 572633 14764350 ~ 14893241 (-) False XLOC_028648
TCONS_00058144 lncRNA upstream 627783 14819500 ~ 14893241 (-) True XLOC_028648
TCONS_00058145 lncRNA upstream 783615 14975332 ~ 14980376 (-) True XLOC_028653
TCONS_00055537 mRNA downstream 3102 14180997 ~ 14185225 (-) True XLOC_028637
TCONS_00055534 mRNA downstream 15189 14170459 ~ 14173138 (-) True XLOC_028634
TCONS_00055525 mRNA downstream 192561 13963499 ~ 13995766 (-) False XLOC_028630
TCONS_00055526 mRNA downstream 215114 13963505 ~ 13973213 (-) False XLOC_028630
TCONS_00055527 mRNA downstream 215114 13966451 ~ 13973213 (-) True XLOC_028630
TCONS_00055544 mRNA upstream 1363 14193080 ~ 14207471 (-) False XLOC_028639
TCONS_00055546 mRNA upstream 55976 14247693 ~ 14328997 (-) False XLOC_028640
TCONS_00055547 mRNA upstream 56028 14247745 ~ 14315855 (-) True XLOC_028640
TCONS_00055551 mRNA upstream 257516 14449233 ~ 14470071 (-) False XLOC_028643
TCONS_00055552 mRNA upstream 259070 14450787 ~ 14486822 (-) False XLOC_028643
TCONS_00055536 other downstream 8847 14176521 ~ 14179480 (-) True XLOC_028636
TCONS_00055533 other downstream 18696 14167042 ~ 14169631 (-) False XLOC_028633
TCONS_00055510 other downstream 621052 13563667 ~ 13567275 (-) True XLOC_028621
TCONS_00055502 other downstream 932514 13208111 ~ 13255813 (-) True XLOC_028612
TCONS_00055495 other downstream 1209428 12975216 ~ 12978899 (-) True XLOC_028608
TCONS_00055545 other upstream 6307 14198024 ~ 14205228 (-) True XLOC_028639
TCONS_00055548 other upstream 242173 14433890 ~ 14444863 (-) False XLOC_028642
TCONS_00055549 other upstream 242197 14433914 ~ 14444890 (-) False XLOC_028642
TCONS_00055550 other upstream 245525 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055559 other upstream 552859 14744576 ~ 14744691 (-) True XLOC_028647

Expression Profile

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