RNA id: TCONS_00005248


Basic Information

Item Value
RNA id TCONS_00005248
length 942
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_002827
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28370816 ~ 28380928 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGAATTCAAGGCCTGggaagtacttaaaaacaaacattggcttgaaagtgcttgaatttatagttttattgagtttATGATGTTATTTCTTTAACAACTGTAATGAACTGAGAATTCATCATTTtaaaatttacacatttaaagaactttgacaaataatgcattttagcaatattttagaAACTGCATTTAAATAATACCAGTATTGAATTCAACTAATTGcattgaagttttttttaacatgactgCTTAAAACTgtcaacattttgaaaatgacacattcaaaacatcatcattgacattttaatttaaatattaagtgtaaataaaatgttaagtacaAGAAGGACTTTCATGGCACTGTATATGCTGGGGTGTTCATTACAAAGGTGCATGGTTTAAAACTATTAGTGACTTTAAAAGTCCTGGAATTTGGTGTCCATGAAAGAGTAAGAACTCTGTGatgtgttggtttgtttttgacCCATCTTTTCTTCTGGCTACAGGTATGGCGAGAAGAATCATGGTTTCACTGTGGCCACTTTCTCAAGCGAGGACGATGATGATAAAGAGGATGTGACAAAGAAAGTGACGAGCGCCGTGGAGCGGGTCACGTCGGATTACCACTCTGGATCCTCCTCAGATGAAGACATCAGCTGTAGGGAGATCCAGTATACGACACCTCTTCACAACCAGCCTCCTTACCAGGTTGTTTATGCCAGTGCCCCAGGATGGCATCCGGTACCAAGAAAGAAATTTGGCCCGGGGAAAGGGCACTACCCTCAGCGGCCGCACTACATGATCCGCCCCCCCTGTAGACCCAACCATTCCTTTAAAGCACACAGCTGGGTCCAGCAGGGCTACCGCAGCAAACCCGGCTACTGGGCCAGCAATTCAAACCTACTACACCAGCTTCAGTGACCACTCTTACTACAGCAT

Function

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031113-19 Predicted to be involved in negative regulation of cell population proliferation and negative regulation of mitotic cell cycle. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including immature eye; nervous system; pectoral fin bud; pectoral fin musculature; and segmental plate.

Ensembl:

ensembl_id ENSDART00000140416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005242 lncRNA downstream 49385 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00005241 lncRNA downstream 53123 28317417 ~ 28318086 (-) False XLOC_002826
TCONS_00005769 lncRNA downstream 79220 28276683 ~ 28291989 (-) True XLOC_002823
TCONS_00005768 lncRNA downstream 94322 28261569 ~ 28276887 (-) False XLOC_002823
TCONS_00005767 lncRNA downstream 115103 28239051 ~ 28256106 (-) False XLOC_002823
TCONS_00006072 lncRNA upstream 9600 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA upstream 9600 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006073 lncRNA upstream 9600 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00005770 lncRNA upstream 45166 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006074 lncRNA upstream 87728 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005239 mRNA downstream 2296 28311031 ~ 28368913 (-) False XLOC_002826
TCONS_00005240 mRNA downstream 2514 28312213 ~ 28368695 (-) False XLOC_002826
TCONS_00005236 mRNA downstream 177567 28172344 ~ 28193642 (-) True XLOC_002822
TCONS_00005234 mRNA downstream 253174 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005233 mRNA downstream 253174 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005249 mRNA upstream 19941 28392426 ~ 28395620 (-) True XLOC_002829
TCONS_00005253 mRNA upstream 97822 28470307 ~ 28513861 (-) False XLOC_002835
TCONS_00005254 mRNA upstream 97822 28470307 ~ 28525611 (-) False XLOC_002835
TCONS_00005255 mRNA upstream 101024 28473509 ~ 28477023 (-) False XLOC_002835
TCONS_00005256 mRNA upstream 104907 28477392 ~ 28483672 (-) False XLOC_002835
TCONS_00005238 other downstream 78250 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005237 other downstream 172168 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005228 other downstream 956847 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1201137 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 1362085 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005250 other upstream 70255 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 75421 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 82015 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005262 other upstream 549650 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005263 other upstream 551032 28923517 ~ 28923633 (-) True XLOC_002838

Expression Profile

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