RNA id: TCONS_00058143


Basic Information

Item Value
RNA id TCONS_00058143
length 712
lncRNA type antisense_over
GC content 0.47
exon number 7
gene id XLOC_028648
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 14764350 ~ 14893241 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTTCCCGTGTTTTTCAGCAATGCCAGCACCTCTCAATAACAGATACAAGCAGAAGGAATCTGAGAAAGGATTTCAGACCTGGTTTTCCAGGGATTTGCTGCTTAAGAAGGGAGTACGGATGTGAGACAGCAGGAGTGaagAGTGGAACTTCCAGCTCGGGAAGCAATTAGAGCAAGGGGAGGCCCAGCAGAGGAGCCTGCGCTGGGGAGACGGAGGCGGCAGGTGCTGCTGTCGCTCCTCTGGAGGAATAATCAACTGCTCAAAGGGGTGTGAATGGATTGATCATGTCAAGGTCATGTGAGCGACAGATGCAACAGATGGCAGAGCGAGTGCCAGATTAACCATGAGAGACTGATGTGGGCAACATCTGCAGCTGCTTGAAGATCCTTTCATTCTCATCTGAAGCTTTTCAGTGCCATGGGAGCAGTTTCTATGTGGGAGCCAAGAATCTGCACACTTTAAAAGAGCCAGTTTTCCTGATGTTACAGCATGTTGAATGGGTCTTTTGGATGGAGTCCGGAGCTCTTGTACAGCAGGATCTGGATCCAGTCCAGCAGTTGAAGGCAGAAGATCGTCTGAGGATGTATAAAAAAAACCTCCTGCATTTCCCTTTAAATGACCGACTGAAGAAATTTAAAGCGTGACTTCTGGTTTCACACAAAATCCTTTCAAGTGACTTCTGAATGGATTCATTTCCAATTGAACTTCGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058142 lncRNA downstream 319460 14430963 ~ 14444890 (-) False XLOC_028642
TCONS_00058141 lncRNA downstream 403502 14346867 ~ 14360848 (-) True XLOC_028641
TCONS_00055535 lncRNA downstream 577621 14174239 ~ 14186729 (-) True XLOC_028635
TCONS_00058140 lncRNA downstream 577627 14174239 ~ 14186723 (-) False XLOC_028635
TCONS_00058139 lncRNA downstream 593944 14168122 ~ 14170406 (-) True XLOC_028633
TCONS_00058145 lncRNA upstream 82091 14975332 ~ 14980376 (-) True XLOC_028653
TCONS_00055568 lncRNA upstream 112975 15006216 ~ 15006700 (-) True XLOC_028655
TCONS_00055571 lncRNA upstream 241998 15135239 ~ 15139790 (-) False XLOC_028657
TCONS_00055572 lncRNA upstream 242044 15135285 ~ 15140224 (-) False XLOC_028657
TCONS_00055573 lncRNA upstream 242315 15135556 ~ 15140202 (-) True XLOC_028657
TCONS_00055558 mRNA downstream 20695 14713008 ~ 14743655 (-) True XLOC_028646
TCONS_00055557 mRNA downstream 115192 14644076 ~ 14649158 (-) True XLOC_028645
TCONS_00055556 mRNA downstream 121971 14636309 ~ 14642379 (-) True XLOC_028644
TCONS_00055555 mRNA downstream 139869 14481835 ~ 14624481 (-) True XLOC_028643
TCONS_00055554 mRNA downstream 232663 14450952 ~ 14531687 (-) False XLOC_028643
TCONS_00055560 mRNA upstream 2265 14895506 ~ 14899113 (-) True XLOC_028649
TCONS_00055561 mRNA upstream 13367 14906608 ~ 14915268 (-) True XLOC_028650
TCONS_00055562 mRNA upstream 24261 14917502 ~ 14926637 (-) False XLOC_028651
TCONS_00055563 mRNA upstream 24450 14917691 ~ 14926106 (-) True XLOC_028651
TCONS_00055564 mRNA upstream 39296 14932537 ~ 14954029 (-) False XLOC_028652
TCONS_00055559 other downstream 19659 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055549 other downstream 319460 14433914 ~ 14444890 (-) False XLOC_028642
TCONS_00055548 other downstream 319487 14433890 ~ 14444863 (-) False XLOC_028642
TCONS_00055550 other downstream 319575 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055545 other downstream 559122 14198024 ~ 14205228 (-) True XLOC_028639
TCONS_00055578 other upstream 864194 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055582 other upstream 1110659 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055587 other upstream 1320183 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055632 other upstream 2364119 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 2834145 17727386 ~ 17740785 (-) False XLOC_028701

Expression Profile

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