RNA id: TU2402050


Basic Information

Item Value
RNA id TU2402050
length 102
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2100012
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 6962503 ~ 6962604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcttcctatcattgtgaagcagaattcaccaagcgttggattgttaacccactaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2402043 lncRNA downstream 22412 6939849 ~ 6940091 (-) True G2100005
TU2402040 lncRNA downstream 25805 6936396 ~ 6936698 (-) True G2100002
TU2402038 lncRNA downstream 28077 6934163 ~ 6934426 (-) True G2100000
TU2401992 lncRNA downstream 88523 6873770 ~ 6873980 (-) True G2099959
TU2401991 lncRNA downstream 90025 6872119 ~ 6872478 (-) True G2099958
TU2402059 lncRNA upstream 7116 6969720 ~ 6969941 (-) True G2100021
TU2402061 lncRNA upstream 9344 6971948 ~ 6972202 (-) True G2100023
TU2402063 lncRNA upstream 12531 6975135 ~ 6975899 (-) False G2100024
TU2402064 lncRNA upstream 12824 6975428 ~ 6975899 (-) True G2100024
TU2402074 lncRNA upstream 22833 6985437 ~ 6994698 (-) True LOC110508409
XM_021588918.2 mRNA downstream 135885 6817234 ~ 6826618 (-) True LOC110508405
XR_005040119.1 mRNA downstream 162689 6752808 ~ 6799814 (-) True LOC110508403
XM_021588914.2 mRNA downstream 163022 6752808 ~ 6799481 (-) False LOC110508403
XM_021588924.2 mRNA upstream 23136 6985740 ~ 7016472 (-) False LOC110508409
XM_021588925.2 mRNA upstream 23136 6985740 ~ 7016472 (-) False LOC110508409
XM_021588926.2 mRNA upstream 23136 6985740 ~ 7016472 (-) False LOC110508409
XR_002471307.2 mRNA upstream 76490 7039094 ~ 7052373 (-) False LOC110508412
XR_005040218.1 mRNA upstream 78442 7041046 ~ 7052373 (-) True LOC110508412
TU2401301 other downstream 523407 6426170 ~ 6439096 (-) True G2099318
TU2400957 other downstream 723890 6238169 ~ 6238613 (-) True G2098997
TU2400956 other downstream 724409 6237433 ~ 6238094 (-) True G2098996
TU2400731 other downstream 964181 5995825 ~ 5998322 (-) False G2098793
TU2402165 other upstream 241002 7203606 ~ 7206488 (-) True G2100109
TU2402839 other upstream 630690 7593294 ~ 7593815 (-) True G2100707
TU2402916 other upstream 805812 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other upstream 805812 7768416 ~ 7771183 (-) True LOC110508434
TU2403222 other upstream 1030807 7993411 ~ 7998865 (-) True LOC110508443

Expression Profile