RNA id: TU2403388


Basic Information

Item Value
RNA id TU2403388
length 219
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2101205
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 8118715 ~ 8118933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcaacttcgtgtatgtaaacttctgtcccactggaattgtgatacagtgagttatacgtgaataatctttctgtaaacaactgttggataaattacttgtcatgcacaaagtagatgtcctaacccacttgccaaaactatagtttgttaacaagacatttgtggagtggttgcaaaacagtttttaatgactccaacctaagtgtatgcaaacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2403387 lncRNA downstream 775 8117553 ~ 8117940 (-) True G2101204
TU2403373 lncRNA downstream 16036 8102452 ~ 8102679 (-) True G2101191
TU2403369 lncRNA downstream 19419 8099091 ~ 8099296 (-) True G2101187
TU2403367 lncRNA downstream 23370 8095117 ~ 8095345 (-) True G2101185
TU2403366 lncRNA downstream 24250 8093829 ~ 8094465 (-) True G2101184
TU2403408 lncRNA upstream 25797 8144730 ~ 8144942 (-) True G2101225
TU2403438 lncRNA upstream 48408 8167341 ~ 8167618 (-) True G2101255
TU2403687 lncRNA upstream 95708 8214641 ~ 8223253 (-) True G2101485
TU2403663 lncRNA upstream 106666 8225599 ~ 8233556 (-) False G2101463
TU2403664 lncRNA upstream 106666 8225599 ~ 8236601 (-) False G2101463
XM_021588965.2 mRNA downstream 52014 8062040 ~ 8066701 (-) False LOC110508444
XM_021588966.2 mRNA downstream 52014 8062040 ~ 8066701 (-) True LOC110508444
XM_021588967.2 mRNA downstream 54151 8062040 ~ 8064564 (-) False LOC110508444
XM_036966962.1 mRNA downstream 54151 8062040 ~ 8064564 (-) False LOC110508444
XM_021588964.2 mRNA downstream 74706 7996393 ~ 8044009 (-) False LOC110508443
XM_036966305.1 mRNA upstream 142223 8261156 ~ 8275376 (-) False LOC110508446
XM_036966306.1 mRNA upstream 142223 8261156 ~ 8275376 (-) False LOC110508446
XM_036966307.1 mRNA upstream 142223 8261156 ~ 8275376 (-) False LOC110508446
XM_036966309.1 mRNA upstream 142223 8261156 ~ 8275385 (-) False LOC110508446
XM_036966308.1 mRNA upstream 142223 8261156 ~ 8304991 (-) True LOC110508446
TU2403222 other downstream 119850 7993411 ~ 7998865 (-) True LOC110508443
TU2402916 other downstream 347532 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other downstream 347532 7768416 ~ 7771183 (-) True LOC110508434
TU2402839 other downstream 524900 7593294 ~ 7593815 (-) True G2100707
TU2402165 other downstream 912227 7203606 ~ 7206488 (-) True G2100109
TU2403426 other upstream 39286 8158219 ~ 8158518 (-) True G2101243
TU2403666 other upstream 119211 8238144 ~ 8239853 (-) True G2101464
TU2403860 other upstream 362799 8481732 ~ 8482413 (-) True LOC118936616
TU2404356 other upstream 857919 8976852 ~ 8978099 (-) True LOC110508274
TU2405120 other upstream 1059401 9178334 ~ 9180150 (-) True LOC110508459

Expression Profile