RNA id: TCONS_00005770


Basic Information

Item Value
RNA id TCONS_00005770
length 414
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_002830
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28417651 ~ 28418179 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATGATTCACTTGAACTGTTGTGGATCAGAGATGGAGAATTCTTCAACAGCTCACACTCAAATAAATCATTCAGTCATGAATCATACCTTATACTGCCACCACAAATCAACAACACAGTCTACTTCTGCTGGGTAAACCACTCATCCTTAGACAAACCGCTCATCGCCAATTTATCAAGCTCTGCCTGCTATGAAAATGAGGGTTGTGATTTAATGGTGACTGTAGCAGTGGCATTTGTCATCTCTGCGGTGTTGACTGTAATTTTGGTCACTATAGTTGTGTAAACATTGGTAAGTCTTAAATGTGTGCACTCTGCCCTAGTCCgtctatatttattttcattcttaAACTAGCGTGCTGTTGTAACAGTCTATTGCTGTTTCTCAACTTCTAAGAATGCAAAAAGTTTCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006073 lncRNA downstream 32082 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 32097 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA downstream 32097 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005242 lncRNA downstream 95827 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00005241 lncRNA downstream 99565 28317417 ~ 28318086 (-) False XLOC_002826
TCONS_00006074 lncRNA upstream 42034 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005269 lncRNA upstream 710023 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006075 lncRNA upstream 848091 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005294 lncRNA upstream 2844673 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 2844673 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00005249 mRNA downstream 22031 28392426 ~ 28395620 (-) True XLOC_002829
TCONS_00005243 mRNA downstream 36723 28370816 ~ 28380928 (-) False XLOC_002827
TCONS_00005247 mRNA downstream 36732 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005246 mRNA downstream 36732 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005245 mRNA downstream 36732 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005253 mRNA upstream 52128 28470307 ~ 28513861 (-) False XLOC_002835
TCONS_00005254 mRNA upstream 52128 28470307 ~ 28525611 (-) False XLOC_002835
TCONS_00005255 mRNA upstream 55330 28473509 ~ 28477023 (-) False XLOC_002835
TCONS_00005256 mRNA upstream 59213 28477392 ~ 28483672 (-) False XLOC_002835
TCONS_00005257 mRNA upstream 80198 28498377 ~ 28519309 (-) False XLOC_002835
TCONS_00005248 other downstream 45166 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005238 other downstream 124692 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005237 other downstream 218610 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005228 other downstream 1003289 27414246 ~ 27414362 (-) True XLOC_002819
TCONS_00005218 other downstream 1247579 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005250 other upstream 24561 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 29727 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005252 other upstream 36321 28454500 ~ 28455171 (-) True XLOC_002833
TCONS_00005262 other upstream 503956 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005263 other upstream 505338 28923517 ~ 28923633 (-) True XLOC_002838

Expression Profile

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