RNA id: TU2405104


Basic Information

Item Value
RNA id TU2405104
length 2212
lncRNA type antisense_over
GC content 0.48
exon number 14
gene id G2102731
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9231694 ~ 9255166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGTGATCCAGaaaataaatcatttatttacattgAAGTTTGAATCACATTGAGGAAAAGGAAATTAAGACTCCAGACTTCCATTTCATGACCGTATTGCTGCTGATGTGGATAAAGAAATTATTCTACGAGTGTACAGAAAAAAAAAGGTTTCATTTTTCATGAAAGCAGTGAATGAGGCGATAGAAACATTTCCAACCTCCAACCCACCCCAGAAAAACGACAGGCTTTAAAAGAAGAGGTGAAAAGGGTTTCTGTTTCAACTCATTACCGCCTTTAACCAGGTTAACCATCAAACAGCCAGAACTGACCATGAGGATGATTCCTACTGTTTCTATGAGATCTAGGAAAGACAGTTTGATATATCTATGACAGTCTTCATAGAGTGTGAGAATGGTTTAATGAGGGTAAAGACTGGTTTCTGGATTGCTGCTGAGAATCACCAAAGCTCTAAAAACCAATATTGACAGACCACTGGAAGGGGGAGGTGTTGGAAAAGGTGGGTTTTGGCGAATAAGGTGGACATCCATCGGAGgcaaagagagaatgagagagttggCCGGGAGAAAGCAATATTGACAGACGGCCTGggatgaggagtgtgtgtgtgtggggggggggggggggtagaggagataTGGGGCGGTCCACttgaggcagagagggggaacgTAGGACTGTGTagtacagagagagcgagagagacacccCTCTGGTTCTTCAGTATTTCTTAAACTCCACGTCGTCTGGAGGGCTCATCTCCACTGTTCTCTTCCCCACGTCCGTCCAGTTGGTGCTCAGGACTGTACCACCTGACTCCATAAAGGACTTGTTCATGGCCCGTTTGACCTCGTCGGTGCCGTCCCCGTAGATCTGCTGGAAGAGTTTGTTGAGCGCTGCGTCTCCCTCCAGTTTCTCCTTCTTTTCCTCCTCACTGATGTCGACCACCACCTTGTCCCAGTTACGGCTGGAGTGGGACGAAGAAGGGTACTGGTTGGGGGTGAAGTGTTTGACGCTGGGCTCCTGTCCTTCACCCTCCAGTTTCTCCCACCTGGTCCCCTCAGTCTTCTTCATTTTGATCTCCACCTTAGTGGAGAGGACCTTGAAGGTGCTGTGTTGGGGGACGATGGGATGCAGTAGGTTCATGTTCAGGCTGAAGTCCTCCCCCGACGGAAGTTTCACCACCGCCGACAACTGTCTCTCTTCGAAGTTGATGTTGACCCCATCCTTAGGCACATTTTTCACCATGATGGTGACGATGACCTGAGACTCTGTCTGGTACCAGTCATGCTTAATGTGTGGCGTCGGTGTCTTGTTCTCCTTTCCATTCTGATTGGCCATCTCCATCATCTCCTCACAGCGTTTGATCCACATTTGGAAAGTGTTATCGGAGCCGTCCAGGCTGTGTCCCTGAGTGAAGGCAGCATGTGCCGACTCGAAGTGGTTCAGGTGGAACTCTGCCATTCCTGTTCTCATGAAGGCAAGCGCAAGACTGGGGTTGAGCTGCTGGGCTTTCTTGGCATCATCGACAGCACagctgtagtTTTTCAGTTGGAGGTGGGCATAGGCTCGTTGGCAGAACCATTCTGAATTGTCTGAGTTACCTTCCAATGCTTCGTTAAGTTCCTCGATAGCTTTCTGTGGGTTCTCGTCTATGAAGCTATCGGAGAAACTGCGTTCGGATGCCATGGGGCTAGAAGTGTTGTCAGTGGGAGAAAGAGCAGAGACTAGCTAGCTGGAAAGTTCTAGATGGGAATCAGAAAACGAAACTATGCTGGAGAATGGAGCCTAAACTCTTGCGCTATAGTTCAGTCAAAGATGTGTATAagtaaaccaagatagaccactgCCTGTCATTTCCAATGGGAACTAACGAGCctcagtgggcagaacaagcagagccaagcacgaactagcgagatcctattggtgcGTTCTAGCATCATCTgaatatttccgttagggaacacaCGCTATGTGAAAcgcgcgtgtgcaataactccATTCCCCATTGCGCTCCTTCTAAACAACGCGATTTTTAACAACTTTTCCAAAGGGTAAAGTTTGCTAAACTTAATCCATTCTGTTCAGAACATATTCTAGTTTTGGAAacctgtattgagatcaaatgtttaatcgatgagaaCATTTGCCTAATGTCGaccaaaatccatctcgttccatGTGCTCGCAAGTGGGCTTCCTGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405111 lncRNA downstream 79294 9150479 ~ 9152400 (-) True G2102736
TU2405098 lncRNA downstream 87962 9129789 ~ 9143732 (-) True G2102729
TU2404401 lncRNA downstream 175328 9055019 ~ 9056366 (-) True G2102112
TU2404372 lncRNA downstream 229847 9001577 ~ 9001847 (-) True G2102088
TU2404371 lncRNA downstream 230174 9001243 ~ 9001520 (-) True G2102087
TU2405188 lncRNA upstream 192573 9447739 ~ 9448387 (-) False si:ch73-71c20.5
TU2405189 lncRNA upstream 192573 9447739 ~ 9448703 (-) False si:ch73-71c20.5
TU2405191 lncRNA upstream 192573 9447739 ~ 9448703 (-) False si:ch73-71c20.5
TU2405192 lncRNA upstream 192573 9447739 ~ 9448332 (-) False si:ch73-71c20.5
TU2405193 lncRNA upstream 192573 9447739 ~ 9448332 (-) True si:ch73-71c20.5
XM_021588986.2 mRNA downstream 51452 9154717 ~ 9180242 (-) False LOC110508459
XM_021588987.2 mRNA downstream 51485 9159023 ~ 9180209 (-) False LOC110508459
XM_036966725.1 mRNA downstream 108147 9107174 ~ 9123547 (-) True LOC110508458
XR_005040250.1 mRNA downstream 108148 9107174 ~ 9123546 (-) False LOC110508458
XM_036966727.1 mRNA downstream 108150 9107174 ~ 9123544 (-) False LOC110508458
XM_036966816.1 mRNA upstream 780 9255946 ~ 9263669 (-) True LOC110508462
XM_021588994.2 mRNA upstream 10138 9265304 ~ 9269449 (-) True LOC110508463
trnal-caa-108 mRNA upstream 84612 9339778 ~ 9339890 (-) True trnal-caa-108
XM_036966384.1 mRNA upstream 118737 9373903 ~ 9392396 (-) True LOC110508465
trnae-cuc-376 mRNA upstream 138115 9393281 ~ 9393352 (-) True trnae-cuc-376
TU2405120 other downstream 51544 9178334 ~ 9180150 (-) True LOC110508459
TU2404356 other downstream 253595 8976852 ~ 8978099 (-) True LOC110508274
TU2403860 other downstream 749281 8481732 ~ 8482413 (-) True LOC118936616
TU2403666 other downstream 991841 8238144 ~ 8239853 (-) True G2101464
TU2403426 other downstream 1073176 8158219 ~ 8158518 (-) True G2101243
TU2405308 other upstream 312800 9567966 ~ 9569051 (-) True G2102910
TU2405415 other upstream 521453 9776619 ~ 9776908 (-) True G2103015
TU2405361 other upstream 541328 9796494 ~ 9811858 (-) True LOC110508473
TU2405551 other upstream 749060 10004226 ~ 10007903 (-) True LOC110508476
TU2405613 other upstream 858262 10113428 ~ 10115397 (-) True G2103203

Expression Profile