RNA id: TCONS_00058153


Basic Information

Item Value
RNA id TCONS_00058153
length 1670
lncRNA type read_through
GC content 0.34
exon number 2
gene id XLOC_028664
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15913165 ~ 15974147 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCTTCCAATGACTAATTGTTTCACTACATAAGACATCAATGTATCATCAGGCACCACATGTATTACTTTCCTTTTGACTATATATGCTTTTATTTAACTCTCAACGTATCGATAACTGCTGACCAACATGGTACTGTATGATGGTTTAAGCTTGAAAAGCTCTCTAATGTTCTACTAACAAAAGTGTTTCATAATGGATGACTATCTTTGGTTACTAACTCTATAAATACCACTAGTAATCCTACCCTTTCAGAGGAGCTGTTGATTTGGAGAAACTTTAAAGATGTAACATCACTGAAGTTGGTTTCTACTAGTTTCTTTTCTTCTACATCTACCAGCATGTCCTTGGTTTTACTCAGATCATCATTTTTGCGAACAGTAGAGATAGTCCAAACAGTAGGAAGCACTTCTGGTTCACCCACAGTCTCCTTAAGACAATACAAACATTCTATCAGTACAAAATGTGtcaaatatatttaagaaaaaagtatttaagtgatgttatgtttaatgttaatgtttgctTACAGGACTGGGTTCAGGCATCTGTCCTTCTTCAAGATCAGACTCTTCTTCAATCAAGTCTGTATCAGGAAAACAAACAAGTGAAACTTAATGGACTTACTGCTATTCCTGGAGACCCGATCGGCCCATTTTCCCCCTGTGCACCCTGTCAAGCAAATGTATTGTTGAATAGGGTAAGTAGTTTATTTGGTAATGAACAAACGTTACGAATGATGAATCAGAATAGAGTACTCCAAGgaaaatattttcataaaaaattattttatttgatgcttTAAAAAGTTAGTATTTCAAAGAGTAAACAGAGTTATGACCACAAgactaaactgaaaaaactaTTTACCatatatttgattaatatttgttgttttattttaattgaaagcAACAGTCGGgttccagagaaaaaaaaaaaaaaactcattcattttctccgTAGGGGAACTGATAGTTCACAGCAGGTCTGTCTTTTTAAACTAATTACAGTATATATTCTTTAGTTGAACCTttatttagtaacactttattttaatggtccattcgagttttagtagactgtctgcttaatatctgttgatactgctccttcaacagacatttaactgactacaagTGCAAAggatgtcaacttacactaaccctaatcctATTCCCAACATAACTGTCTACTTCTAATCTTATAAGcattgacatgtagatgcaatgtaatttaaattcaacaaacgaaccatcacAATAAAGTGTGCCCCTTTATTTTTATAGAAAAGGCACATTTGTCATGTTCCTTAGTAAAATACCTTCTCTCCTTGATCTCCTTTAAGACCCTTTTTCCCCTAAACAGAGACAAAAACACGAAACGGTGAAAAACCTCTGCCATTATGCAACACTTTTTCAACCAAATCTGTGAAAATATTCACactgatttacttttaaagtgacattatttAACACTATGAATTGACTTTAAATGTGAAATGGTTGTGTAAAGTCTGACAAACCCGAGGGCCTGCGATCCCTTGGAGTCCTTGGATTCCTACTTCACCCTTGGGATGAATACAATACAGATTACACATTCCACAAGAAAGTCATTTAATTCCATTGATTTTAAATACTTGCTTACCTTTGAGCCTGAGAGTCCAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058152 lncRNA downstream 8609 15915485 ~ 15919626 (-) False XLOC_028664
TCONS_00057343 lncRNA downstream 167644 15757487 ~ 15760591 (-) True XLOC_028663
TCONS_00058150 lncRNA downstream 167656 15757435 ~ 15760579 (-) False XLOC_028663
TCONS_00055579 lncRNA downstream 168562 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055577 lncRNA downstream 324686 15600779 ~ 15603549 (-) True XLOC_028662
TCONS_00058154 lncRNA upstream 60940 16003900 ~ 16004729 (-) False XLOC_028666
TCONS_00058155 lncRNA upstream 60940 16003900 ~ 16018238 (-) False XLOC_028666
TCONS_00055583 lncRNA upstream 70217 16013177 ~ 16019130 (-) False XLOC_028666
TCONS_00058156 lncRNA upstream 70217 16013177 ~ 16025255 (-) True XLOC_028666
TCONS_00057344 lncRNA upstream 91337 16034297 ~ 16037221 (-) False XLOC_028667
TCONS_00055575 mRNA downstream 324647 15490215 ~ 15603588 (-) False XLOC_028662
TCONS_00055576 mRNA downstream 324724 15490219 ~ 15603511 (-) False XLOC_028662
TCONS_00055574 mRNA downstream 507783 15217929 ~ 15420452 (-) True XLOC_028659
TCONS_00055570 mRNA downstream 824539 15081385 ~ 15103696 (-) True XLOC_028656
TCONS_00055569 mRNA downstream 824589 15081385 ~ 15103646 (-) False XLOC_028656
TCONS_00055580 mRNA upstream 53274 15996234 ~ 16001118 (-) False XLOC_028665
TCONS_00055581 mRNA upstream 53274 15996234 ~ 16001215 (-) True XLOC_028665
TCONS_00055585 mRNA upstream 133759 16076719 ~ 16124419 (-) False XLOC_028670
TCONS_00055586 mRNA upstream 135587 16078547 ~ 16124417 (-) True XLOC_028670
TCONS_00055588 mRNA upstream 374336 16317296 ~ 16334362 (-) False XLOC_028675
TCONS_00055578 other downstream 168562 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 1183544 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055549 other downstream 1483345 14433914 ~ 14444890 (-) False XLOC_028642
TCONS_00055548 other downstream 1483372 14433890 ~ 14444863 (-) False XLOC_028642
TCONS_00055582 other upstream 60940 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055587 other upstream 270464 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055632 other upstream 1314400 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 1784426 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 1793483 17736443 ~ 17737812 (-) True XLOC_028702

Expression Profile

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