RNA id: TU2405410



Basic Information


Item Value
RNA id TU2405410
length 213
lncRNA type intronic
GC content 0.39
exon number 1
gene id G2103010
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9765867 ~ 9766079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGTCTGTCTGCAAAATTGCTCAGAGCTAAGTCTGCAATCTTAAGTGAGTAGTCAGACAAAGACATAATCTTGATGTAAAATGTTGAGAATTGAGTAAAACCTCACATAGGCTACGCCAGCAGGATAGAGAAGGCAGTATACAGCATCATGCAGTTAAAGAGATCATTTTTCACTTGCATATTCCCCTACGGTAAGATGGCTACACATATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2405409 lncRNA downstream 124 9765536 ~ 9765743 (-) True G2103009
TU2405408 lncRNA downstream 2608 9762957 ~ 9763259 (-) True G2103008
TU2405404 lncRNA downstream 7856 9757792 ~ 9758011 (-) True G2103004
TU2405403 lncRNA downstream 8634 9757015 ~ 9757233 (-) True G2103003
TU2405401 lncRNA downstream 11537 9753937 ~ 9754330 (-) True G2103001
TU2405413 lncRNA upstream 3851 9769930 ~ 9770194 (-) True G2103013
TU2405414 lncRNA upstream 10227 9776306 ~ 9776543 (-) True G2103014
TU2405417 lncRNA upstream 15724 9781803 ~ 9782033 (-) True G2103017
TU2405422 lncRNA upstream 27075 9793154 ~ 9793491 (-) True G2103022
TU2405423 lncRNA upstream 28302 9794381 ~ 9794885 (-) True G2103023
XM_036966211.1 mRNA downstream 90648 9629144 ~ 9675219 (-) False LOC110508471
XM_036966213.1 mRNA downstream 90649 9629144 ~ 9675218 (-) False LOC110508471
LOC110508157 mRNA upstream 131694 9897773 ~ 9937313 (-) True LOC110508157
LOC110508158 mRNA upstream 172894 9938973 ~ 9940505 (-) True LOC110508158
XM_021589014.2 mRNA upstream 238147 10004226 ~ 10007929 (-) False LOC110508476
XM_021589018.2 mRNA upstream 264714 10030793 ~ 10041030 (-) False LOC110508478
XM_021589019.2 mRNA upstream 264714 10030793 ~ 10041031 (-) True LOC110508478
TU2405308 other downstream 196816 9567966 ~ 9569051 (-) True G2102910
TU2405103 other downstream 510701 9231694 ~ 9255166 (-) False G2102731
TU2405120 other downstream 585717 9178334 ~ 9180150 (-) True LOC110508459
TU2404356 other downstream 787768 8976852 ~ 8978099 (-) True LOC110508274
TU2403860 other downstream 1283454 8481732 ~ 8482413 (-) True LOC118936616
TU2405415 other upstream 10540 9776619 ~ 9776908 (-) True G2103015
TU2405361 other upstream 30415 9796494 ~ 9811858 (-) True LOC110508473
TU2405551 other upstream 238147 10004226 ~ 10007903 (-) True LOC110508476
TU2405613 other upstream 347349 10113428 ~ 10115397 (-) True G2103203
TU2405667 other upstream 439984 10206063 ~ 10206676 (-) True G2103257

Expression Profile