RNA id: TCONS_00055581


Basic Information

Item Value
RNA id TCONS_00055581
length 1465
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_028665
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 15996234 ~ 16001215 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCAGCCTGAGACCTTTGGATCCTTAGCAACCCGACGCCTGCTCACAGCCAGTTTTAAGGAATGACAGCTGAGTGACAGACTCTTAATGTCACTCAACAGCACATGTTTCAGCCCATCAGGATAAACAACCGATTCACACTGCGATAAAGTGCAGAGATCGAGAATGTCAGGCGACTCACCTAATGACAGTGAGTGTGGGTCAGCTCGTCGTGTGAGCAGAGAATGGTGGCTTCACGTGGGTTTGTTGTGTGTTCCTCTGCTCGCCGTGTATCTGCACATCCCTCCGCCACAGCTGTCACCTGCGCTTAACAGCTGGCGCACTTCCGGTCACTTCTTCACATTCAGAGGCAATGACATCTTCTATAAAGAGTCAGTTGGAGTTGTGGGAAGCTCTGATGTCCTTGTGTTGCTTCATGGCTTTCCTACGTCAAGCTATGACTGGTATAAGATCTGGGATTCTCTGACGCAGCGCTTCAATAGAGTCATCGCCCTTGACTTCCTGGGCTTCGGTTTTTCTGACAAACCGAGGCCGCACCGGTACTCCATCTTCGAGCAGGCCAGTGTTGTGGAAGCTCTAGTTGCCCATTTGGGTTTGTCAGAGCAGAGGATCAACATCCTATCACACGACTACGGAGACACTGTTGCTCTCGAGTTACTGTACAGGAGTGACCACAACAGAAGCGGACACATCATTGTAAACAGCCTCTGCCTATCAAATGGAGGTATATTCCCAGAGACTCATCATCCAAGATTCCTTCAGAAAGTGCTGAAGGACTCCGGCTTTATTTCACCTGTACTCACTCGTCTGATGAACTTCCAGCTTTTCTCCAGAGGAATTAAGGAAGTGTTTGGACCGTACACCCAGCCAACAGAAGCAGAAGTCTGGGACATGTGGACAGGCATTCGCTTTAATGATGGAAATCTTGTAATGGACAGTCTTTTGCAATACATTAACCAGaggctgaaacacagagaacgATGGGTGGGCGCTCTAACTTCGACTTTAACACCCCTGCACATGATTTATGGACCCCTAGATCCAGTTAATCCACATCCGCAGTTTCTGCAGCTTTACCAGAAACTAGTGCAGAGATCCACAGTATCTGTTCTAGATGAGCACGTGAGTCATTATCCACAGCTGGAGGATCCCACAGGATTCTTTAATGCCTATCTCAGCTTTATCAACTCATTCTAAGCCGGGGGATGATCGGATCATTCTGAAGCGAGAAATAAAGTGAAATTATGTTCCAAATAAGGTTGAAAACATACAAACCCATTAATATACCGCAAAGTATTTCTGATGCAAGTCATGTGACTGAATGCATGAAGTATTGCACCAAATGCCCAATCATTGCAAGTACTTGTTAATGAATTTGCTCATATTGTATGCCATAACTTGTAAATACATTTGTGTAACAAACATGAATGCTTTTTttggaaataataaataattcttattATA

Function

GO:

id name namespace
GO:0010883 regulation of lipid storage biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991111-5 Predicted to enable catalytic activity. Predicted to be involved in regulation of lipid storage. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human MEST (mesoderm specific transcript).

Ensembl:

ensembl_id ENSDART00000125389

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058151 lncRNA downstream 22087 15913165 ~ 15974147 (-) False XLOC_028664
TCONS_00058153 lncRNA downstream 53274 15928235 ~ 15942960 (-) True XLOC_028664
TCONS_00058152 lncRNA downstream 76608 15915485 ~ 15919626 (-) False XLOC_028664
TCONS_00057343 lncRNA downstream 235643 15757487 ~ 15760591 (-) True XLOC_028663
TCONS_00058150 lncRNA downstream 235655 15757435 ~ 15760579 (-) False XLOC_028663
TCONS_00058154 lncRNA upstream 2685 16003900 ~ 16004729 (-) False XLOC_028666
TCONS_00058155 lncRNA upstream 2685 16003900 ~ 16018238 (-) False XLOC_028666
TCONS_00055583 lncRNA upstream 11962 16013177 ~ 16019130 (-) False XLOC_028666
TCONS_00058156 lncRNA upstream 11962 16013177 ~ 16025255 (-) True XLOC_028666
TCONS_00057344 lncRNA upstream 33082 16034297 ~ 16037221 (-) False XLOC_028667
TCONS_00055575 mRNA downstream 392646 15490215 ~ 15603588 (-) False XLOC_028662
TCONS_00055576 mRNA downstream 392723 15490219 ~ 15603511 (-) False XLOC_028662
TCONS_00055574 mRNA downstream 575782 15217929 ~ 15420452 (-) True XLOC_028659
TCONS_00055570 mRNA downstream 892538 15081385 ~ 15103696 (-) True XLOC_028656
TCONS_00055569 mRNA downstream 892588 15081385 ~ 15103646 (-) False XLOC_028656
TCONS_00055585 mRNA upstream 75504 16076719 ~ 16124419 (-) False XLOC_028670
TCONS_00055586 mRNA upstream 77332 16078547 ~ 16124417 (-) True XLOC_028670
TCONS_00055588 mRNA upstream 316081 16317296 ~ 16334362 (-) False XLOC_028675
TCONS_00055589 mRNA upstream 318948 16320163 ~ 16333944 (-) False XLOC_028675
TCONS_00055591 mRNA upstream 319533 16320748 ~ 16330368 (-) False XLOC_028675
TCONS_00055578 other downstream 236561 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 1251543 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055549 other downstream 1551344 14433914 ~ 14444890 (-) False XLOC_028642
TCONS_00055548 other downstream 1551371 14433890 ~ 14444863 (-) False XLOC_028642
TCONS_00055582 other upstream 2685 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055587 other upstream 212209 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055632 other upstream 1256145 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 1726171 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 1735228 17736443 ~ 17737812 (-) True XLOC_028702

Expression Profile

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