RNA id: TU2405647


Basic Information

Item Value
RNA id TU2405647
length 226
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2103237
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10190638 ~ 10190863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaggggtcaggtttagggttaggggttaggtttaggattcggagttaaggttaggttgagtgttaggggtttagggttaaggcgagggttaaggttaggtttcagTTAAAggtttaagggttaggggttagggaaaataagattttgagtgggaatcaattgtttggtccccacaaggatagaaaaacaaacatgtgtgtgtgtgtctgtgtggttgtgtgagcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405644 lncRNA downstream 2915 10187508 ~ 10187723 (-) True G2103234
TU2405643 lncRNA downstream 4447 10185991 ~ 10186191 (-) True G2103233
TU2405641 lncRNA downstream 6522 10183908 ~ 10184116 (-) True G2103231
TU2405639 lncRNA downstream 14474 10175929 ~ 10176164 (-) True G2103229
TU2405580 lncRNA downstream 130678 10058349 ~ 10059960 (-) True LOC118944863
TU2405665 lncRNA upstream 14725 10205588 ~ 10205902 (-) True G2103255
TU2406107 lncRNA upstream 18701 10209564 ~ 10209898 (-) True G2103625
TU2406109 lncRNA upstream 20868 10211731 ~ 10211947 (-) True G2103627
TU2406121 lncRNA upstream 31434 10222297 ~ 10222525 (-) True G2103639
TU2406138 lncRNA upstream 40499 10231362 ~ 10231580 (-) True G2103647
XM_021589022.2 mRNA downstream 15795 10152976 ~ 10174843 (-) True mmp14b
XM_021589020.2 mRNA downstream 114210 10068866 ~ 10076428 (-) True dhrs1
XR_005040255.1 mRNA downstream 130595 10058356 ~ 10060043 (-) False LOC118944863
XM_021589019.2 mRNA downstream 149607 10030793 ~ 10041031 (-) True LOC110508478
XM_021589018.2 mRNA downstream 149608 10030793 ~ 10041030 (-) False LOC110508478
XR_002471318.2 mRNA upstream 46492 10237355 ~ 10244790 (-) True LOC110508487
XM_021589036.2 mRNA upstream 101148 10292011 ~ 10301313 (-) False LOC110508490
XM_021589034.2 mRNA upstream 101148 10292011 ~ 10301367 (-) False LOC110508490
XM_021589037.2 mRNA upstream 101148 10292011 ~ 10301367 (-) False LOC110508490
XM_021589035.2 mRNA upstream 101148 10292011 ~ 10301368 (-) True LOC110508490
TU2405613 other downstream 75241 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 182735 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 378780 9796494 ~ 9811858 (-) True LOC110508473
TU2405415 other downstream 413730 9776619 ~ 9776908 (-) True G2103015
TU2405308 other downstream 621587 9567966 ~ 9569051 (-) True G2102910
TU2405667 other upstream 15200 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 517149 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 695335 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 1308263 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 5348905 15539768 ~ 15554897 (-) True G2109663

Expression Profile