Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055585 |
| length | 5951 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 21 |
| gene id | XLOC_028670 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 16076719 ~ 16124419 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060349 | bone morphogenesis | biological_process |
| GO:0060119 | inner ear receptor cell development | biological_process |
| GO:0034505 | tooth mineralization | biological_process |
| GO:0051480 | regulation of cytosolic calcium ion concentration | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0048840 | otolith development | biological_process |
| GO:0007605 | sensory perception of sound | biological_process |
| GO:0030282 | bone mineralization | biological_process |
| GO:0048919 | posterior lateral line neuromast development | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0006874 | cellular calcium ion homeostasis | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005388 | calcium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0030165 | PDZ domain binding | molecular_function |
| GO:0019829 | ATPase-coupled cation transmembrane transporter activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030925-29 | Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Acts upstream of or within animal organ development and sensory perception of sound. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; hematopoietic system; midbrain neural tube; nervous system; and pleuroperitoneal region. Orthologous to human ATP2B1 (ATPase plasma membrane Ca2+ transporting 1). |
| ensembl_id | ENSDART00000077664 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058164 | lncRNA | downstream | 1218 | 16063647 ~ 16075501 (-) | False | XLOC_028669 |
| TCONS_00058165 | lncRNA | downstream | 1282 | 16072985 ~ 16075437 (-) | True | XLOC_028669 |
| TCONS_00058158 | lncRNA | downstream | 7004 | 16041555 ~ 16069715 (-) | False | XLOC_028669 |
| TCONS_00058163 | lncRNA | downstream | 7267 | 16063647 ~ 16069452 (-) | False | XLOC_028669 |
| TCONS_00058160 | lncRNA | downstream | 7271 | 16046558 ~ 16069448 (-) | False | XLOC_028669 |
| TCONS_00058166 | lncRNA | upstream | 3254 | 16127673 ~ 16144076 (-) | False | XLOC_028671 |
| TCONS_00058167 | lncRNA | upstream | 3254 | 16127673 ~ 16187740 (-) | False | XLOC_028671 |
| TCONS_00058168 | lncRNA | upstream | 3254 | 16127673 ~ 16192183 (-) | True | XLOC_028671 |
| TCONS_00058169 | lncRNA | upstream | 171105 | 16295524 ~ 16303001 (-) | False | XLOC_028673 |
| TCONS_00058171 | lncRNA | upstream | 171105 | 16295524 ~ 16313944 (-) | False | XLOC_028673 |
| TCONS_00055581 | mRNA | downstream | 75504 | 15996234 ~ 16001215 (-) | True | XLOC_028665 |
| TCONS_00055580 | mRNA | downstream | 75601 | 15996234 ~ 16001118 (-) | False | XLOC_028665 |
| TCONS_00055575 | mRNA | downstream | 473131 | 15490215 ~ 15603588 (-) | False | XLOC_028662 |
| TCONS_00055576 | mRNA | downstream | 473208 | 15490219 ~ 15603511 (-) | False | XLOC_028662 |
| TCONS_00055574 | mRNA | downstream | 656267 | 15217929 ~ 15420452 (-) | True | XLOC_028659 |
| TCONS_00055588 | mRNA | upstream | 192877 | 16317296 ~ 16334362 (-) | False | XLOC_028675 |
| TCONS_00055589 | mRNA | upstream | 195744 | 16320163 ~ 16333944 (-) | False | XLOC_028675 |
| TCONS_00055591 | mRNA | upstream | 196329 | 16320748 ~ 16330368 (-) | False | XLOC_028675 |
| TCONS_00055593 | mRNA | upstream | 212737 | 16337156 ~ 16345227 (-) | False | XLOC_028676 |
| TCONS_00055594 | mRNA | upstream | 215099 | 16339518 ~ 16341801 (-) | True | XLOC_028676 |
| TCONS_00055582 | other | downstream | 68552 | 16003900 ~ 16008167 (-) | False | XLOC_028666 |
| TCONS_00055578 | other | downstream | 317046 | 15757435 ~ 15759673 (-) | False | XLOC_028663 |
| TCONS_00055559 | other | downstream | 1332028 | 14744576 ~ 14744691 (-) | True | XLOC_028647 |
| TCONS_00055549 | other | downstream | 1631829 | 14433914 ~ 14444890 (-) | False | XLOC_028642 |
| TCONS_00055548 | other | downstream | 1631856 | 14433890 ~ 14444863 (-) | False | XLOC_028642 |
| TCONS_00055587 | other | upstream | 89005 | 16213424 ~ 16213540 (-) | True | XLOC_028672 |
| TCONS_00055632 | other | upstream | 1132941 | 17257360 ~ 17260959 (-) | False | XLOC_028692 |
| TCONS_00055646 | other | upstream | 1602967 | 17727386 ~ 17740785 (-) | False | XLOC_028701 |
| TCONS_00055647 | other | upstream | 1612024 | 17736443 ~ 17737812 (-) | True | XLOC_028702 |
| TCONS_00055657 | other | upstream | 1791513 | 17915932 ~ 17949318 (-) | False | XLOC_028708 |
