RNA id: TU2408227


Basic Information

Item Value
RNA id TU2408227
length 1400
lncRNA type read_through
GC content 0.38
exon number 3
gene id G2105514
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11677574 ~ 11746281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttattttattttaccaaaTTAAGCAAATCTATAGTGGTGTACCAATATACCAATATGAGATTCTATTGCAAATCAGATTTAAATCTGTCAATACCGAGCTGCAATACAGTCCACGCATTAAAATGTTAAAACATTAAGATTTTCATTCAAGACATGGTTACCATATTACAACATTGTGCTTCTTTCTAGTGCCAATGCGCAGCATTGTCAACAAGCATGTCTGTAACAAACATCTCGAGCCCCTGGTTGCcccataataacaataataaatttTACTTTCATATCTTTGCTCAACCCTACATTCTGAGGTACTACAGACAACTGGGCACAGCCCTAACTGTAAGCAAAAACATTACTGCAAGATGTGAAGCCAGACCAAGCCTAGTATAATGTACTTACAGACTGAGCTCTTGTTCACAGATcttggatcagttttgccttttcaTTTATCATTATATGGACATGGTGGCCCTGGTCCAAGATCATCACTCTTACTCTGCGTCACTGTGAATATTGACCCATATTGTCacacaatattattataataacGTTAATAAAAGTTGCCTCAAATCAAGCTAGTCAAGTTTTTCAGTAACTGTGGAACCATAGAAACAAAATTACAGTAATTATTTTTCTATGTGTGGAACACCTGGAATGTATACCAGGTTAACTGTATCTTTAAACATTATTTGGtttcattattagttacattaCAGTATACATAAATGATTCGTCAAACTTTATTTTCTTCTCAGAGAAGTAATCTTTTGCATATATTATCATTCTCTTTACACATTCTACTTAGCTAATCTAAAGAATAGCTGGTCCTCAAGAGAAAATAAAGAGTAGGGTCATAAGATGTAAACTAGACGTTTATGGGGGTTTAAGTTTTTCCTATATTCACATAGCTGACTTCCTGTGTTGAGAGGGGAAACAGTATATCATCCTATTGCTGCTAATGTTACATTAGGGGGCTATTCTAGGTTACTGAAATCAgtggtgttcattaggcaccaaaacaGACAAAAACAGGGAAAGACTACTGGTCGACAAGAAATgtccattgcaaaacatttttccACTGTGTGCCCTAATGAAAACTACCCAGAATTGCCCATCAGAATTAAATAAAGTGTGAGAGGCCTCAGAGACACACCCAACAGTTATTCCTGAGTTGCATCCCTGCATTGCGAGTGCGTGTCAGAAATCATAGAAACTGCTACCTCCGTCACCCCACATTGTCTCTCCCAGACCAGGACAGAAAGGTTAGTTAGTTCAAAATCATCATTGTCCTGCTCTTTGCCCCACAGAGCCTCTAGAAGTTGAGGCGGTGCTCCCTTTCTGTGCCGGCATAGCGCTTGTTGGCTGCAAACACCTTGGCTTTGTTTACCGAAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2408252 lncRNA downstream 45833 11684745 ~ 11685379 (-) True G2105533
TU2408234 lncRNA downstream 68604 11661827 ~ 11662608 (-) True G2105515
TU2408172 lncRNA downstream 84097 11571542 ~ 11647115 (-) True G2105462
TU2408166 lncRNA downstream 183715 11547297 ~ 11547497 (-) True G2105456
TU2408146 lncRNA downstream 184739 11542568 ~ 11546473 (-) True G2105437
TU2408322 lncRNA upstream 42890 11789171 ~ 11789818 (-) True G2105591
TU2408346 lncRNA upstream 79806 11826087 ~ 11826535 (-) True G2105613
TU2408375 lncRNA upstream 136767 11883048 ~ 11885307 (-) True G2105641
TU2408376 lncRNA upstream 139620 11885901 ~ 11886194 (-) True G2105642
TU2408377 lncRNA upstream 140212 11886493 ~ 11887271 (-) True G2105643
XM_021589130.2 mRNA downstream 99471 11590108 ~ 11631741 (-) False LOC110508549
XM_021589131.2 mRNA downstream 99471 11590108 ~ 11631741 (-) False LOC110508549
XM_021589132.2 mRNA downstream 99471 11590108 ~ 11631741 (-) False LOC110508549
XM_021589133.2 mRNA downstream 99471 11590108 ~ 11631741 (-) True LOC110508549
XM_021589126.2 mRNA downstream 158745 11556591 ~ 11572467 (-) True LOC110508547
XM_021589136.2 mRNA upstream 7794 11754075 ~ 11786100 (-) False LOC110508552
XM_021589137.2 mRNA upstream 7794 11754075 ~ 11786100 (-) True LOC110508552
XM_021589142.2 mRNA upstream 90366 11836647 ~ 11843646 (-) False gata6
XM_021589141.2 mRNA upstream 90366 11836647 ~ 11843781 (-) False gata6
XM_021589140.2 mRNA upstream 90366 11836647 ~ 11843807 (-) True gata6
TU2408125 other downstream 231140 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 837132 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 1022713 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 1524536 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 1615815 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 3793487 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 3857404 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 3957055 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 5053109 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 5509927 17256208 ~ 17257395 (-) True LOC110508646