RNA id: TU2408460


Basic Information

Item Value
RNA id TU2408460
length 2153
lncRNA type read_through
GC content 0.40
exon number 3
gene id G2105721
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12018034 ~ 12059826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAGGTTCCTCTGTGGACTGGGCCAGTTGCTCAGGTCTCATGTTCTGTTCAGTGTTCTCGTGTGCCCTTGCTTTGTTGTTTTGCTATGAAGATCTTGAGTAAATATTTTGGATTTACCCTTACCTCtgcctgctgtgtttctctgcgCCTGGGTCCGAGTTCGTACTAGCATTAATGTCACAGTAGACTGTTCTCACTACTACCGCATGACAAATGGAACcgtagtgccaagtctaggtccaaaagtctCCTGAACAGCTTTTATAAGAcggctgaacaattaatcaaatgactATTTACATTCGGGGGAAAAAAAGAATGTTgaaccagatacaatgctatttcacaacTGACTTTCACCACGTTTATAGGGAGGGGCACTCAACATGTGCGGTACTAAAACAAATGACTgttgattggctgaaagaaattgataacgATATGATTGTGGGAGCGGTTTTGTCATGCAtcttttgacattatcaatcatagtcgGCTGCTGAAAAAAACGGCGTGTTGTGGCATCCtctgctacagttgaagtcggacgtttacatacaccttagccaactacatttaaactcagtttttcacaattcctgacatttaatcctagtaaaaattctctcTTAGGTCAGtgtggatcaccactttattttaagaatgtgaaatgtcagaataatagcagagcttttatttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttgtggGGTGGCAAGTAtcatagtggttagagagttggactagtaactgaaaggttgcaagatcgaatccctgagctgacaaggtaaaaatctgtcattctgctcctgaacaaggcagttaacccactgtttctaggccgtcattacaaataagaatttgttcttaactgacttgcctagtaaaataaatctaGCACCTTCATTTTAACATGAGGTTTCAGGTTGATATGCTCAGCAAATACCCTACAAGTAGGGTAAAATACAGTACTGGTCCATGAAGTAATTAAGACTTGGCTGTGTCTTTAACAACCTGGACAACAATAACCTCCCTGTGGTATTTGTATATTCATTTATTAGGCCTTTTGGGTATAGTTACTTACATATTAAAAATAATTGAAGTCAAGTGTGTTTGCATGAAGGAATTAGAGGCATGGGTCGTTCAAACTAAGATAGtgcaatttcacattccttatcaTTAATAATGAGTTACATTGTTAGAGCTATTTGGTGTGCGCACAGGTAGAATGTGTGAATAAAAATGCATGCAGAACAATTCAAGAGAACATAAATACTGTGATCTGTTCGGGTAAGGTGAAGTTATCATCTCGAACCAAGAACCAAGTATCACGCTACTCTAGCAGCTAGCTGTCTGTCATGAGAGATTAGATATagttatttttttgtgttttctttaaaaAGGAATTAACGATCTTCAACATAAAACATTCACATTCataacaaagacagacagacagagacagactatgtaaaaataaatacaatcccTGAGGACTAAAATCCTACTGATACACAAGTTGTTGTTGAGAACACTGAAGGACGGGGAAAGACAGAGGAAAATATGTCCTACAGTACTTCTGTTAACTTGAAAAAGTATTTCCACCACACACATTTAGCTAGCACAACTAATGTGAACGTACTCATCTTTTCACCGTCGACATGAGCAATTGCAATCACTTTTTCGAATAAGCATCGTATGAATTCATGGGGACATACATTGAATGAATTCATGTATGAAGGAATACATGAATGGACGGACAAATGTTGTATTGTGACAGGGTGTTCACTTcaaaagaaaatgttttttttgcttgtagggagggatggagacgaGGAAGTAAGGAGAGAAGGactgggggaaggagaaaaggaatgaaggaaagagagagggagaaaaggaaggTGTGAAGGAACgacagagagaatgaaaaagaGAAGAACTGGTCACCACCCTGTTCGATGACGGCCTTGGCAAACTGCTTGAACACGCGATCCATGTAGGTGCTCCGTCGGGGCCACAGGCCCTCCAGGAAACCTATATGGCCCCCATGGCAAGTGATAAGGAGGGCTAGGTTAGGGTTCTGCTTCACTGCCTCCACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2408398 lncRNA downstream 29817 11924465 ~ 11988217 (-) True G2105660
TU2408377 lncRNA downstream 130763 11886493 ~ 11887271 (-) True G2105643
TU2408376 lncRNA downstream 131840 11885901 ~ 11886194 (-) True G2105642
TU2408375 lncRNA downstream 132727 11883048 ~ 11885307 (-) True G2105641
TU2408346 lncRNA downstream 191499 11826087 ~ 11826535 (-) True G2105613
TU2408508 lncRNA upstream 45212 12105038 ~ 12105264 (-) True G2105769
TU2408512 lncRNA upstream 52432 12112258 ~ 12112492 (-) True G2105773
TU2408513 lncRNA upstream 54200 12114026 ~ 12114293 (-) True G2105774
TU2408612 lncRNA upstream 210541 12270367 ~ 12285271 (-) True G2105867
TU2408746 lncRNA upstream 423050 12482876 ~ 12483108 (-) True G2106000
XM_021589145.2 mRNA downstream 23220 11906126 ~ 11994814 (-) False mib1
XM_036966884.1 mRNA downstream 23220 11906126 ~ 11994814 (-) False mib1
XM_036966885.1 mRNA downstream 23220 11906126 ~ 11994814 (-) False mib1
XM_036966886.1 mRNA downstream 23220 11906126 ~ 11994814 (-) False mib1
XM_036966887.1 mRNA downstream 23220 11906126 ~ 11994814 (-) False mib1
XM_021589156.2 mRNA upstream 162268 12222094 ~ 12230902 (-) True thoc1
XM_021589158.2 mRNA upstream 185964 12245790 ~ 12248509 (-) True LOC110508565
XM_021589161.2 mRNA upstream 450854 12510680 ~ 12515518 (-) True myl13
XM_021589163.2 mRNA upstream 578685 12638511 ~ 12666401 (-) False LOC110508569
XM_021589165.2 mRNA upstream 584026 12643852 ~ 12666391 (-) True LOC110508569
TU2408125 other downstream 517962 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 1123954 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 1309535 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 1811358 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 1902637 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 3479942 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 3543859 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 3643510 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 4739564 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 5196382 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile