RNA id: TCONS_00005252


Basic Information

Item Value
RNA id TCONS_00005252
length 594
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_002833
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 28454500 ~ 28455171 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAAAGAAAGTTATCAGAGCAGTGGAAGGAGCCACTGTCCATCTTCCCTGCCATTTACCTTCTGTAGAGAGTCTACAGGTTACAGTAGAGTGGAGCATCAATACAACCAGTAGCAATTTTATTTGTACATGGAGCATTGATATGTCCAACTCCCTTGTATCTCCCTTGAAAGATTGCTTTCCTCATTTTACAATAACCAGTAAGCCTGTTACATTAGAGATCAAAAATGTTCAGCCTGGTGACTCTGGTAAATACAGCTGTAAAACAACTACATTAATTCCACCTCCGTCAGTGGAAGAAAGCTCATCTCTGATTCTCCAAGTCGCAGGTCTGTCCCTGAAGCCACTGAACAGCACTAATGACAGCTGTGTTCATCTGCTCTGCTCTCTTGACTCTGATCTGGCCAACTTCACCTGGAGCCGAGGAGGTCAGATGTTACCACTTGTGTCCACATTTAATGCTGATAATAGTGAACTGCAGCTGTGCAAACCTGACTGGAGTGGAGGAGACACAATCACCTGTCACGTCAACTACTCAGGAACCCAAACCCAAAAAAGCATCAAATTCAGCAGATCAGAAAATGCTAACAGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138526

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005770 lncRNA downstream 36321 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 68931 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006072 lncRNA downstream 68946 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00006071 lncRNA downstream 68946 28382085 ~ 28385554 (-) False XLOC_002828
TCONS_00005242 lncRNA downstream 132676 28320244 ~ 28321824 (-) True XLOC_002826
TCONS_00006074 lncRNA upstream 5042 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005269 lncRNA upstream 673031 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006075 lncRNA upstream 811099 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005294 lncRNA upstream 2807681 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006076 lncRNA upstream 2807681 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00005249 mRNA downstream 58880 28392426 ~ 28395620 (-) True XLOC_002829
TCONS_00005247 mRNA downstream 73581 28370818 ~ 28380919 (-) False XLOC_002827
TCONS_00005253 mRNA upstream 15136 28470307 ~ 28513861 (-) False XLOC_002835
TCONS_00005254 mRNA upstream 15136 28470307 ~ 28525611 (-) False XLOC_002835
TCONS_00005255 mRNA upstream 18338 28473509 ~ 28477023 (-) False XLOC_002835
TCONS_00005256 mRNA upstream 22221 28477392 ~ 28483672 (-) False XLOC_002835
TCONS_00005257 mRNA upstream 43206 28498377 ~ 28519309 (-) False XLOC_002835
TCONS_00005251 other downstream 5632 28447906 ~ 28448868 (-) True XLOC_002832
TCONS_00005250 other downstream 10760 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005248 other downstream 82015 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005238 other downstream 161541 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005237 other downstream 255459 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005262 other upstream 466964 28922135 ~ 28922251 (-) True XLOC_002837
TCONS_00005263 other upstream 468346 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005273 other upstream 1252897 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005276 other upstream 1281015 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005286 other upstream 2075972 30531143 ~ 30531257 (-) True XLOC_002854

Expression Profile

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