RNA id: TCONS_00058171


Basic Information

Item Value
RNA id TCONS_00058171
length 1945
lncRNA type inter_gene
GC content 0.43
exon number 8
gene id XLOC_028673
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16295524 ~ 16313944 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacaaacaaacagTTGCTAATGGAGCACAAATGGTTTAGTCCATTGTTTCAAACCCCGCTCAGCACCGCCTAAAAAGAAGAGGTGAAAGCTGATTCGCTGCCGGCGATAAACGTCACATCCGCAAGTTTCTTATGAGTACGTGAGACAGACGTTTTTAGCCACGTTTTTCTTACGATCGTTGAAGAGACAACAGCTGAAACTTCCGTCCTTGGTCGAAGTCTTTTTGTTTAGGAATACAAGAGGCCTTTTTTATTCTGCTTTAACTCTCGCTAATTTTTATAGCTCTTTTGTACAACCAAATACTTTTTTGGGGGTAATGTGTCCTGAAATCATCACTATGAAGAAAAGCTACCAGAAGGACATCAAGACCGCGCCTGATCATAAACAGAAATGGTCAAAATCAAAGAAAAGGACAATTCTTCAAGCAAAAGTCGACGAAAGAAGGGTACGCGTCCGGGCCTGGTCATCCAGGAGACCGCAGCTCAGCCCAGGCCGTGTCGAAAGAGCAGCTGCGGGCGATCAGAGATTTGTACCGTCTGTAGCCATGGCACCAAGAAACACCACGCAGTACTTAATGGACATTGAATCGCTGGACTTCCAGCAGCGAGACTTCGAGGAGCTGTTCTTCAGGAATGAAATCTGAGGTGTTTCCCCTGAAACCTGACTTGATCTCGTCGGAAAGAGAAGACCGGGCAGCTGTGAACGCATAGACCGTAATATCATTGCGCAGACTCCAACTCGGGGAGACGGAACGCTCTGCGTCACAGCTGCGCGATGACGTGTAAGCCACGCCCACCAGCACGTGGCCAGCAGTGTGCATGCATTGTTCTGCCAACGGATGCATGTGTGTTTTGAGAGACTTTTACAGGTTGCCGACCTTCCTCGATGGATCTAAGCGGTCTGTGCAACCCACTCAGAGCCTTGGGACAAAGCCACATGGCTGCCTGGTCACCACTGCTGGGGGTTTTTTGATTGTCTTGCACAATTGGGGCCCATGGAGTTTTAGGACCATCACTGTTGAACATTAAGCATTCGCCAGTTTCCAAAATGACTGAGATGACCAATCAAATAAAAGTAGGCATGGCTTGCCCAACGCTTCAGTTTGTGAAAACAGATGTATTGGAAAAGCTTGTGTGAATCAGCTGTTTAGTGAAGGACAAATGAACCAGTCTTCCGCCCTCAGGCAAAGCACACTTCAATACAAGATAGAGAACAAAGACTCTCCCCCCTCCATCCCTCCCTACTGTTCTCTTTCCATTCGGGGACATTTGGGAGCCTTGGGAACGGTTTCCATGGCGACAGTGACTGCAGACGAGGCGAGTGTGCTGAGACAGGGATGTGAACGCTCTGCCACTCTCGTCTCATGCGGAGCGCTGGTCTGCCTCATTCCTCCCCGCTCATTTCTACAATGAGCTGCTAGATTTGTTTGACTGTTAAAAGAGGAGCTTTcccttgtttattatttataggtTTGTGGCAAACAAAGCAGATGTGCAAGATGCataattctatacatatacatataattcTATACATATTTATATCCCTGTGTGCCTGCATTAATGTTCGGTTAATGGCAGGGTAAATAGACTGcttttaactaaattaaattatactATTTTCTTAATGCTATTGTTTAATACccttttttttaaaaccacattTTAGATTAGCAACAgacctattaaaataaaatccttgaaaatgtttttttgttgttgttgttgttattgttgctgGTGTTTAAATAAGGATTATATTGAAAGCCTGGATTTGTAAAATAGGTCACATGGTATATATTCTGTGTGGTTTTTATTAACCAATGTTTTTGAATATAGAATTATTCtgtttagtttctttattcacTATTATAATTTCTGTCATCTTCACCTTTTTCAGGTTATCAATATTTTTTCAGATATATTAAAGTCCTCATGAAATCAG

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070528 protein kinase C signaling biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1904029 regulation of cyclin-dependent protein kinase activity biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058168 lncRNA downstream 103341 16127673 ~ 16192183 (-) True XLOC_028671
TCONS_00058167 lncRNA downstream 107784 16127673 ~ 16187740 (-) False XLOC_028671
TCONS_00058166 lncRNA downstream 151448 16127673 ~ 16144076 (-) False XLOC_028671
TCONS_00058164 lncRNA downstream 220023 16063647 ~ 16075501 (-) False XLOC_028669
TCONS_00055590 lncRNA upstream 6663 16320607 ~ 16322582 (-) False XLOC_028675
TCONS_00055592 lncRNA upstream 11669 16325613 ~ 16333832 (-) True XLOC_028675
TCONS_00058173 lncRNA upstream 97934 16411878 ~ 16442573 (-) False XLOC_028678
TCONS_00057346 lncRNA upstream 125804 16439748 ~ 16443053 (-) False XLOC_028678
TCONS_00057345 lncRNA upstream 125804 16439748 ~ 16443053 (-) True XLOC_028678
TCONS_00055585 mRNA downstream 171105 16076719 ~ 16124419 (-) False XLOC_028670
TCONS_00055586 mRNA downstream 171107 16078547 ~ 16124417 (-) True XLOC_028670
TCONS_00055581 mRNA downstream 294309 15996234 ~ 16001215 (-) True XLOC_028665
TCONS_00055580 mRNA downstream 294406 15996234 ~ 16001118 (-) False XLOC_028665
TCONS_00055575 mRNA downstream 691936 15490215 ~ 15603588 (-) False XLOC_028662
TCONS_00055588 mRNA upstream 3352 16317296 ~ 16334362 (-) False XLOC_028675
TCONS_00055589 mRNA upstream 6219 16320163 ~ 16333944 (-) False XLOC_028675
TCONS_00055591 mRNA upstream 6804 16320748 ~ 16330368 (-) False XLOC_028675
TCONS_00055593 mRNA upstream 23212 16337156 ~ 16345227 (-) False XLOC_028676
TCONS_00055594 mRNA upstream 25574 16339518 ~ 16341801 (-) True XLOC_028676
TCONS_00055587 other downstream 81984 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 287357 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 535851 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 1550833 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 1850749 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 943416 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 1413442 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 1422499 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 1601988 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 1685573 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile

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