RNA id: TU2408909


Basic Information

Item Value
RNA id TU2408909
length 1353
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2106138
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12735106 ~ 12736458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgtttaaATAAAACACAGGAACAATCTTAACCATTTGAGGCACTTTGGAGTCTCATAATGCTAAAGGCAGAATTATGTATCTACAAGAAACGCAGAAAACAACTTCATTCATTTACACTAGCTATGTTTCCATCAACTTGGCCAGAGATTTTTTGGGGTCGACATTTAGAAAGTTTGCATTGAAAATAAATGCAACAATTGTctgaaaaccagcaggctccggacctcgtagggtaagagttgagtaccccttACCGAGTGTCAAACACAAATTAAAtggttgaagtgtttccattatccATTTGGGCAAATTGCGCATTAATAAATTGCCTGtatgccctcccacctatctgtttcatgtctcaggtagcccgcAAAACCCAGCATGGATAGTATGCAAGAATTGATTAATATTTGCCATTTCTAATCATTCTGATTTGCCAACGTATCGCCACAGTCGTTGCAATGGTAGAACTTGCAATCTTGTAGAAAAAAAATTGGATGGTGATActtgggtaacactttacttaacagccagtgtcataacacattatgacacgtcataaccatgtcataatatgtcataacagcgtATAACCTGgcgtaatatggtcataacactgtcatgaccaaTATATTTACGCCTGTTGAGATAAATATATTGCATAATTTTATGGCTGGTTAACACCCCTAATCTTATGATAAGAGAGTCATGACACCCATTTAAAAATCCACTCTTGTCGAACAGATAAAAATGTTGTTGATCTTTCCAACATTTCTCCCATGGCTGCCGTTTCCATTAAATGTGTTGcaatgtttgtgttgttgttgcaaCATTGCTTTTGTCTAATAAATCTGGGTAAATGGAAACCTGCCTTCTGAAagttttaaaggcccagtgcagtcaaaattccgtatttcctgtgttttatatcatattgtacaacacaGCTGATGAAACTTAAGACCATAAAAGTGGGACTTAACTTgactcatcgcgctctagcgactcctttcGGCGGGCCAGGCGCTTGCAGACTCACTTCTGTTGTCAGTTTAAAAGTGTTTCCTGCGACACATTgatgcagctggcttccgggttaagtgagtaAGTGTTGAGGCGCGgcttggcaggtcatgtttcggaggacgcatcagttgacctttgcctctcccaagcccgttggggagttgcagcaatgagacaagatcgaaaccAAACAAGAGGGTTCTATTGTGATAGGTGGAAtggggctgaggggtgggattaaatcatttatgtttggtaatgtattattgttatgtgattgctttatataaaagtaccatgtatgtaaaatgtgtatgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2408881 lncRNA downstream 92061 12641054 ~ 12643045 (-) True G2106112
TU2408760 lncRNA downstream 232585 12498641 ~ 12502521 (-) True G2106014
TU2408761 lncRNA downstream 238679 12496140 ~ 12496427 (-) True G2106015
TU2408757 lncRNA downstream 242082 12492703 ~ 12493024 (-) True G2106011
TU2408755 lncRNA downstream 244235 12490636 ~ 12490871 (-) True G2106009
TU2408962 lncRNA upstream 15458 12751916 ~ 12753070 (-) True G2106182
TU2409006 lncRNA upstream 71451 12807909 ~ 12808139 (-) True G2106225
TU2409058 lncRNA upstream 106838 12843296 ~ 12843706 (-) True G2106277
TU2409060 lncRNA upstream 107938 12844396 ~ 12844874 (-) True G2106279
TU2409065 lncRNA upstream 113109 12849567 ~ 12849908 (-) True G2106284
XM_021589166.2 mRNA downstream 47090 12677824 ~ 12688016 (-) True ccdc13
XM_021589163.2 mRNA downstream 68705 12638511 ~ 12666401 (-) False LOC110508569
XM_021589165.2 mRNA downstream 68715 12643852 ~ 12666391 (-) True LOC110508569
XM_021589161.2 mRNA downstream 219588 12510680 ~ 12515518 (-) True myl13
XM_021589158.2 mRNA downstream 486597 12245790 ~ 12248509 (-) True LOC110508565
XM_036966387.1 mRNA upstream 9561 12746019 ~ 12750292 (-) True LOC110508576
XM_021589178.2 mRNA upstream 197779 12934237 ~ 12968139 (-) True LOC110508577
XM_021589182.2 mRNA upstream 330357 13066815 ~ 13081622 (-) True LOC110508580
XM_036966964.1 mRNA upstream 367620 13104078 ~ 13208076 (-) False obscnb
XM_036966965.1 mRNA upstream 367620 13104078 ~ 13208076 (-) False obscnb
TU2408125 other downstream 1235034 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 1841026 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 2026607 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 2528430 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 2619709 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 2803310 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 2867227 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 2966878 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 4062932 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 4519750 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile