RNA id: TCONS_00055590


Basic Information

Item Value
RNA id TCONS_00055590
length 893
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_028675
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16317296 ~ 16334362 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTCACCTGTCAGCCGCTTTCTAGTAGCCATAAGACCTTGACAGGCTTGTTCAGGTTTGTACGATTATTGCTGGAATGCAGGACTTTGGCTCCACAGAGCTGAAACtggccacccctgctttagtAACATGTGATGCTATCatctttatgtgtttgttttctgaatgGTCTTTTTGTCCTTTGTTATcacaaagataaattaaaaaagATCGACCTGACTAGCAACGGGATTTCCAGGATTGATGATGATGCTTTCTTTGGCCTTCCTTCCCTGGAGGAGTTGATATTACGAGAGAACAATATTAGACAGCTTCCAGCTTTGCCACCATCCATGACCCTTATTGACGTCTGTCACAACCATCTGGGCAGCACTGGCATCCAGAGAGAAGCTTTCAAGGACATGCCAGGGCTACTTTACCTTTACTTGACGGACAACAACATAGACCACATCCCAGTTCCTCTGCCTGAGAGTCTGCGCTCACTTCACCTACAGAATAATAACATCCAGATGATACACGAAGACACCTTCTGCAACCCACACGACTTAAATTACATCCGAAATGCACTTGAGGATGTTCGCCTGGACGGTAATCCCATCAATCTCAGCAGAACCCCACAGGCCTACATATGTTTGCCACGTATCCCCATTGGTAACCTTTtttaaatcgtaaaaaaaaattaaatatgcacaCTTGAATACACACATAAAAAACTCACACGTATGCATATGCATCAAAACTCCTCTGTGCGTACctctctcttaaaaaaaaaaaaaaaaccttgggcTCAAGCAAACACATGGATATGAATGGCTGTCTTTAAAGGAGGTTGGcaaaaatacataaactcacTCTCGAAGGAGTTCTGGTGGACACTTCCAACTCTACGCTGC

Function

GO: NA

KEGG:

id description
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-041008-9 Is expressed in cartilage element; notochord; otic vesicle; and splanchnocranium. Orthologous to human EPYC (epiphycan).

Ensembl:

ensembl_id ENSDART00000140488

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058171 lncRNA downstream 6663 16295524 ~ 16313944 (-) False XLOC_028673
TCONS_00058170 lncRNA downstream 6663 16295524 ~ 16313944 (-) True XLOC_028673
TCONS_00058169 lncRNA downstream 17606 16295524 ~ 16303001 (-) False XLOC_028673
TCONS_00058172 lncRNA downstream 19365 16299656 ~ 16301242 (-) True XLOC_028674
TCONS_00058168 lncRNA downstream 128424 16127673 ~ 16192183 (-) True XLOC_028671
TCONS_00055592 lncRNA upstream 3031 16325613 ~ 16333832 (-) True XLOC_028675
TCONS_00058173 lncRNA upstream 89296 16411878 ~ 16442573 (-) False XLOC_028678
TCONS_00057346 lncRNA upstream 117166 16439748 ~ 16443053 (-) False XLOC_028678
TCONS_00057345 lncRNA upstream 117166 16439748 ~ 16443053 (-) True XLOC_028678
TCONS_00058174 lncRNA upstream 441123 16763705 ~ 16768876 (-) False XLOC_028684
TCONS_00055585 mRNA downstream 196188 16076719 ~ 16124419 (-) False XLOC_028670
TCONS_00055586 mRNA downstream 196190 16078547 ~ 16124417 (-) True XLOC_028670
TCONS_00055581 mRNA downstream 319392 15996234 ~ 16001215 (-) True XLOC_028665
TCONS_00055580 mRNA downstream 319489 15996234 ~ 16001118 (-) False XLOC_028665
TCONS_00055575 mRNA downstream 717019 15490215 ~ 15603588 (-) False XLOC_028662
TCONS_00055593 mRNA upstream 14574 16337156 ~ 16345227 (-) False XLOC_028676
TCONS_00055594 mRNA upstream 16936 16339518 ~ 16341801 (-) True XLOC_028676
TCONS_00055595 mRNA upstream 26460 16349042 ~ 16353733 (-) False XLOC_028677
TCONS_00055596 mRNA upstream 29026 16351608 ~ 16354292 (-) True XLOC_028677
TCONS_00055597 mRNA upstream 46180 16368762 ~ 16406737 (-) False XLOC_028678
TCONS_00055587 other downstream 107067 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 312440 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 560934 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 1575916 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 1875832 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 934778 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 1404804 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 1413861 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 1593350 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 1676935 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile

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