RNA id: TCONS_00055592


Basic Information

Item Value
RNA id TCONS_00055592
length 579
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_028675
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16317296 ~ 16334362 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aCCGTGAGTGACCCATTGCCATTGGCCAGGCCCACCAGCCCTCTGCCTGTCCGATCTGAAGAACAGGACCATTTGggaaaggaggagaaagagCAGGAAGATGGTATCGCTGAGGTTGATGTGGGTACTCCTGGTCCTGTGTGTGGCAGCAGCCTCTCCCCCGAGATACGTCCGACAAACAGAACTACACAATTACGATGACAACAACGATGTGGATTTAGACCAAAATGTTGATGGCGACAATGCCTACGAGGACTATTATGATGGAAATGAATCAGAGATAGAGATTACCCGCGTTGATCCATTTGAGGGCATTGAGTCATCACATAGTGCCTCATTGGAAGAGAAAGAAGAGGAGGAATTACCTATAAAGCCTCAGCTTATTCCACCAAGCTCTGGGGCATCAGGGACTCTGATGGGCCCTAGTGCTCAGGGAGGTCTGTACCATGcatggacaaacacacacactgctatttGTCATTACTTGCCTGCCAACCATTTCATCGTGCTGTTGTTCCATTTAACTGGCAATTTGATTGGTTAAATGAGTTTAATAATCTTTTAACTTTTGCTTTTTAT

Function

GO: NA

KEGG:

id description
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-041008-9 Is expressed in cartilage element; notochord; otic vesicle; and splanchnocranium. Orthologous to human EPYC (epiphycan).

Ensembl:

ensembl_id ENSDART00000134449

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055590 lncRNA downstream 3031 16320607 ~ 16322582 (-) False XLOC_028675
TCONS_00058171 lncRNA downstream 11669 16295524 ~ 16313944 (-) False XLOC_028673
TCONS_00058170 lncRNA downstream 11669 16295524 ~ 16313944 (-) True XLOC_028673
TCONS_00058169 lncRNA downstream 22612 16295524 ~ 16303001 (-) False XLOC_028673
TCONS_00058172 lncRNA downstream 24371 16299656 ~ 16301242 (-) True XLOC_028674
TCONS_00058173 lncRNA upstream 78046 16411878 ~ 16442573 (-) False XLOC_028678
TCONS_00057346 lncRNA upstream 105916 16439748 ~ 16443053 (-) False XLOC_028678
TCONS_00057345 lncRNA upstream 105916 16439748 ~ 16443053 (-) True XLOC_028678
TCONS_00058174 lncRNA upstream 429873 16763705 ~ 16768876 (-) False XLOC_028684
TCONS_00058175 lncRNA upstream 429873 16763705 ~ 16769120 (-) False XLOC_028684
TCONS_00055585 mRNA downstream 201194 16076719 ~ 16124419 (-) False XLOC_028670
TCONS_00055586 mRNA downstream 201196 16078547 ~ 16124417 (-) True XLOC_028670
TCONS_00055581 mRNA downstream 324398 15996234 ~ 16001215 (-) True XLOC_028665
TCONS_00055580 mRNA downstream 324495 15996234 ~ 16001118 (-) False XLOC_028665
TCONS_00055575 mRNA downstream 722025 15490215 ~ 15603588 (-) False XLOC_028662
TCONS_00055593 mRNA upstream 3324 16337156 ~ 16345227 (-) False XLOC_028676
TCONS_00055594 mRNA upstream 5686 16339518 ~ 16341801 (-) True XLOC_028676
TCONS_00055595 mRNA upstream 15210 16349042 ~ 16353733 (-) False XLOC_028677
TCONS_00055596 mRNA upstream 17776 16351608 ~ 16354292 (-) True XLOC_028677
TCONS_00055597 mRNA upstream 34930 16368762 ~ 16406737 (-) False XLOC_028678
TCONS_00055587 other downstream 112073 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 317446 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 565940 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 1580922 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 1880838 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 923528 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 1393554 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 1402611 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 1582100 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 1665685 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile

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