RNA id: TU2411966



Basic Information


Item Value
RNA id TU2411966
length 840
lncRNA type antisense_over
GC content 0.54
exon number 3
gene id G2108922
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14943706 ~ 14945260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctccATCTGCTCCCTTACCTCCCCTGCCTTTCACGCAGACCAATCTACCCCAAAGTCCAAGCTACATCACTCTCCAGTCAGCGCAGACACCTCCTGTAGATGCTGCCTCACCACCTCGTCCAACACTTTGCTGACGCCCTTACAGGCCGTCATTGCAGCCTCCATCAGTGTCTCTAGGTGGTCCTGGTGGAGTCGGGCGTCCATCTGTAGCAGGGCAATGTGCCCGCCACGAGGCAACAATGCCAGGGCCAGTGATGTGCCCCCTCCACTCTCTTCAGCATGGCACAGGTCTGCCAATGGGGTCTCATCCACAAAGCCTGCAGTGCAGGCGCACACATAGTCACGCATGGGGATGCCCGCATCGACTACTGCCAGAGTAGCGGCGTTCACACACGCGCTGTAGTTTCCTCCATCTGACTGCAAGAtCTTGACATAAATGTCTATTTGAGAGCGTGGGTACAGATTAGTCAACACTGCTGCCTCGAAAGTCTGCTTGAGGTGAAGGCTCATCTCTGTGGACTTGCGGTCCCCGTGGGGTCTTCTCTTCCTTTCAGCTGTACTGAAGGTAGCCATGCTGTATTGGCAGTTGATGACAGCACGGTCATGGAGGGTCTTGCTGCGGGAACCTCGCACCTATGAGGACCATACACAACTGCCAGCGCTTTGGTATTTCCCTGTTCTATGTACGCAGACCCGTCAGCTTGGGCAAATACACCCATACGAGCTTGTACTTTCCGCAGTTCAGCAGCTTTTCTTCCATCAAGACGATATCCTTGATCCGACAATAACTCCAGGCCTGCCATATTTCAACGTTTGAACGAACTggcgattaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2411965 lncRNA downstream 545 14942905 ~ 14943161 (-) True G2108921
TU2411962 lncRNA downstream 16398 14927076 ~ 14927308 (-) True G2108918
TU2411723 lncRNA downstream 91150 14852312 ~ 14852556 (-) True G2108696
TU2411721 lncRNA downstream 92837 14850633 ~ 14850869 (-) True G2108694
TU2411720 lncRNA downstream 93500 14850000 ~ 14850206 (-) True G2108693
TU2411969 lncRNA upstream 1677 14946937 ~ 14947147 (-) True G2108924
TU2411970 lncRNA upstream 1950 14947210 ~ 14947515 (-) True G2108925
TU2411973 lncRNA upstream 4578 14949838 ~ 14950186 (-) True G2108928
TU2411977 lncRNA upstream 6453 14951713 ~ 14953188 (-) False LOC110508618
TU2411978 lncRNA upstream 6453 14951713 ~ 14951922 (-) True LOC110508618
XR_002471335.2 mRNA downstream 181084 14761477 ~ 14762622 (-) True LOC110508613
XM_021589265.2 mRNA downstream 291115 14629535 ~ 14652591 (-) True LOC110508612
XM_021589264.2 mRNA downstream 291119 14629535 ~ 14652587 (-) False LOC110508612
XM_021589259.2 mRNA downstream 317805 14615917 ~ 14625901 (-) True LOC110508608
LOC110508166 mRNA downstream 422736 14516805 ~ 14520970 (-) True LOC110508166
XM_021589271.2 mRNA upstream 6453 14951713 ~ 14956486 (-) False LOC110508618
XM_036966366.1 mRNA upstream 6453 14951713 ~ 14956741 (-) False LOC110508618
XM_036966367.1 mRNA upstream 6453 14951713 ~ 14971756 (-) False LOC110508618
XM_036966365.1 mRNA upstream 8408 14953668 ~ 14956499 (-) False LOC110508618
XM_021589274.2 mRNA upstream 368443 15313703 ~ 15315936 (-) True LOC110508622
TU2408125 other downstream 3443634 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 4049626 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 4235207 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 4737030 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4828309 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 594508 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 658425 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 758076 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 1854130 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 2310948 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile