RNA id: TU2411970



Basic Information


Item Value
RNA id TU2411970
length 306
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G2108925
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14947210 ~ 14947515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGTCGGATAATTAAACGTGTTACTACTGGCTCGTCCTTACCTGACACAAATACAGAGGAAGGGACAAGCTGAAATGTTTGTGGTGTGCTATTATtagacttttttttaaatcaaagtaCCTCTGCAAGTATATCAAATAAATTACTCACTGAAGTAACTGCTGGCATTTGGACTTCCTCCTTACCTTGCCCTGGATGGTACACAGGTACACTATCTTCTGGCAGAAGGCTTAGAAAAGGTTGGCCCGGTCCAGGTTTGGCAGCTGGCCATTGAGCCCCTCCAGAACCAGGTGCAGACTGGTGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2411969 lncRNA downstream 63 14946937 ~ 14947147 (-) True G2108924
TU2411966 lncRNA downstream 1950 14943706 ~ 14945260 (-) False G2108922
TU2411967 lncRNA downstream 1950 14943706 ~ 14945260 (-) True G2108922
TU2411965 lncRNA downstream 4049 14942905 ~ 14943161 (-) True G2108921
TU2411962 lncRNA downstream 19902 14927076 ~ 14927308 (-) True G2108918
TU2411973 lncRNA upstream 2323 14949838 ~ 14950186 (-) True G2108928
TU2411977 lncRNA upstream 4198 14951713 ~ 14953188 (-) False LOC110508618
TU2411978 lncRNA upstream 4198 14951713 ~ 14951922 (-) True LOC110508618
TU2412022 lncRNA upstream 71255 15018770 ~ 15019436 (-) True G2108970
TU2412218 lncRNA upstream 322472 15269987 ~ 15270189 (-) True G2109156
XR_002471335.2 mRNA downstream 184588 14761477 ~ 14762622 (-) True LOC110508613
XM_021589265.2 mRNA downstream 294619 14629535 ~ 14652591 (-) True LOC110508612
XM_021589264.2 mRNA downstream 294623 14629535 ~ 14652587 (-) False LOC110508612
XM_021589259.2 mRNA downstream 321309 14615917 ~ 14625901 (-) True LOC110508608
LOC110508166 mRNA downstream 426240 14516805 ~ 14520970 (-) True LOC110508166
XM_021589271.2 mRNA upstream 4198 14951713 ~ 14956486 (-) False LOC110508618
XM_036966366.1 mRNA upstream 4198 14951713 ~ 14956741 (-) False LOC110508618
XM_036966367.1 mRNA upstream 4198 14951713 ~ 14971756 (-) False LOC110508618
XM_036966365.1 mRNA upstream 6153 14953668 ~ 14956499 (-) False LOC110508618
XM_021589274.2 mRNA upstream 366188 15313703 ~ 15315936 (-) True LOC110508622
TU2408125 other downstream 3447138 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 4053130 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 4238711 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 4740534 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 4831813 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 592253 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 656170 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 755821 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 1851875 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 2308693 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile