Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00057346 |
| length | 1048 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | XLOC_028678 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 16368762 ~ 16443053 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0050654 | chondroitin sulfate proteoglycan metabolic process | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0010508 | positive regulation of autophagy | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005518 | collagen binding | molecular_function |
| GO:0030021 | extracellular matrix structural constituent conferring compression resistance | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00055592 | lncRNA | downstream | 105916 | 16325613 ~ 16333832 (-) | True | XLOC_028675 |
| TCONS_00055590 | lncRNA | downstream | 117166 | 16320607 ~ 16322582 (-) | False | XLOC_028675 |
| TCONS_00058171 | lncRNA | downstream | 125804 | 16295524 ~ 16313944 (-) | False | XLOC_028673 |
| TCONS_00058174 | lncRNA | upstream | 320652 | 16763705 ~ 16768876 (-) | False | XLOC_028684 |
| TCONS_00058175 | lncRNA | upstream | 320652 | 16763705 ~ 16769120 (-) | False | XLOC_028684 |
| TCONS_00058176 | lncRNA | upstream | 320652 | 16763705 ~ 16777643 (-) | False | XLOC_028684 |
| TCONS_00058177 | lncRNA | upstream | 320652 | 16763705 ~ 16777689 (-) | False | XLOC_028684 |
| TCONS_00058178 | lncRNA | upstream | 329957 | 16773010 ~ 16777647 (-) | False | XLOC_028684 |
| TCONS_00055598 | mRNA | downstream | 27664 | 16369926 ~ 16412084 (-) | False | XLOC_028678 |
| TCONS_00055597 | mRNA | downstream | 33011 | 16368762 ~ 16406737 (-) | False | XLOC_028678 |
| TCONS_00055596 | mRNA | downstream | 85456 | 16351608 ~ 16354292 (-) | True | XLOC_028677 |
| TCONS_00055595 | mRNA | downstream | 86015 | 16349042 ~ 16353733 (-) | False | XLOC_028677 |
| TCONS_00055593 | mRNA | downstream | 94521 | 16337156 ~ 16345227 (-) | False | XLOC_028676 |
| TCONS_00055600 | mRNA | upstream | 4432 | 16447485 ~ 16451375 (-) | False | XLOC_028679 |
| TCONS_00055599 | mRNA | upstream | 4432 | 16447485 ~ 16451375 (-) | True | XLOC_028679 |
| TCONS_00055601 | mRNA | upstream | 93120 | 16536173 ~ 16545085 (-) | True | XLOC_028680 |
| TCONS_00055602 | mRNA | upstream | 171973 | 16615026 ~ 16628801 (-) | False | XLOC_028681 |
| TCONS_00055603 | mRNA | upstream | 171974 | 16615027 ~ 16628802 (-) | True | XLOC_028681 |
| TCONS_00055587 | other | downstream | 226208 | 16213424 ~ 16213540 (-) | True | XLOC_028672 |
| TCONS_00055582 | other | downstream | 431581 | 16003900 ~ 16008167 (-) | False | XLOC_028666 |
| TCONS_00055578 | other | downstream | 680075 | 15757435 ~ 15759673 (-) | False | XLOC_028663 |
| TCONS_00055559 | other | downstream | 1695057 | 14744576 ~ 14744691 (-) | True | XLOC_028647 |
| TCONS_00055550 | other | downstream | 1994973 | 14437242 ~ 14444775 (-) | True | XLOC_028642 |
| TCONS_00055632 | other | upstream | 814307 | 17257360 ~ 17260959 (-) | False | XLOC_028692 |
| TCONS_00055646 | other | upstream | 1284333 | 17727386 ~ 17740785 (-) | False | XLOC_028701 |
| TCONS_00055647 | other | upstream | 1293390 | 17736443 ~ 17737812 (-) | True | XLOC_028702 |
| TCONS_00055657 | other | upstream | 1472879 | 17915932 ~ 17949318 (-) | False | XLOC_028708 |
| TCONS_00055658 | other | upstream | 1556464 | 17999517 ~ 18038547 (-) | False | XLOC_028708 |
