RNA id: TU2413530


Basic Information

Item Value
RNA id TU2413530
length 775
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G2110396
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16368517 ~ 16369291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCcacaacctaggaagaaacctagagaggaaccaggttatgaggggtggccagtcctcttctggctgtggcgggtggagattatgacagaacatggccaagatgttcaaatgttcatagatgaccagcagggtcaaataataataatcacagtggttgtcgagggtgcaacaggtcagcacctcaagagtaaatgtcagttggcttttcatagccgatcattcactctgctgtctctagagagttgaaaacagcaggtcttggacaggtagcacgtccagagaacaggtcagggttccatagccgcaggcagaacagttgaaactggagcagcggcacggccaggtggactggggacagcaaggagtcatcatgccaggtattCCTGAGGGATGGTACTAcgtctcaggtcctccgagagagagagagaaagaattagagagagcatacttaatttcacacaggacaccggataagacaggagaaatacttcagatataacagactgaccctagccccccgacacaaactactgcagcataaataacggaggctgagacaggaggggtcaggagacactgtggccccgtccgacgatacccccggacagggccaaacaggcaggatataaccccacccacttttccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggtcgagtatagtccacaaagatctccgccacggcacaacccaggggggggacgccaacccagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2413525 lncRNA downstream 4173 16364144 ~ 16364344 (-) True G2110391
TU2413496 lncRNA downstream 24244 16343783 ~ 16344273 (-) True G2110362
TU2413494 lncRNA downstream 25021 16343255 ~ 16343496 (-) True G2110360
TU2413401 lncRNA downstream 106406 16261793 ~ 16262111 (-) True G2110269
TU2413214 lncRNA downstream 301891 16066408 ~ 16066626 (-) True G2110091
TU2413592 lncRNA upstream 38604 16407895 ~ 16408107 (-) True G2110457
TU2413595 lncRNA upstream 42288 16411579 ~ 16411891 (-) True G2110460
TU2413611 lncRNA upstream 55634 16424925 ~ 16425145 (-) True G2110476
TU2413651 lncRNA upstream 84727 16454018 ~ 16454234 (-) True G2110516
TU2414003 lncRNA upstream 373166 16742457 ~ 16742683 (-) True G2110860
XM_021589299.2 mRNA downstream 216760 16143163 ~ 16151757 (-) True LOC110508637
XM_021589291.2 mRNA downstream 314171 16029118 ~ 16054346 (-) True LOC110508634
XM_021589288.2 mRNA downstream 350567 15934185 ~ 16017950 (-) False LOC110508633
XM_021589290.2 mRNA downstream 350567 15934185 ~ 16017950 (-) True LOC110508633
XM_021589287.2 mRNA downstream 447667 15908442 ~ 15920850 (-) False LOC110508632
XR_002471338.2 mRNA upstream 449995 16819286 ~ 16828277 (-) False LOC110508642
XM_021589320.2 mRNA upstream 520241 16889532 ~ 16901564 (-) True LOC110508644
XM_021589323.2 mRNA upstream 885028 17254319 ~ 17260420 (-) False LOC110508646
XM_036966580.1 mRNA upstream 893932 17263223 ~ 17275074 (-) False LOC110508647
XM_036966576.1 mRNA upstream 893932 17263223 ~ 17285016 (-) False LOC110508647
TU2412853 other downstream 657588 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 764054 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 813620 15539768 ~ 15554897 (-) True G2109663
TU2408125 other downstream 4868445 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 5474437 10886198 ~ 10894080 (-) True LOC110508522
TU2414083 other upstream 430099 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 886917 17256208 ~ 17257395 (-) True LOC110508646
TU2416252 other upstream 2091883 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 2130250 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 2288262 18657553 ~ 18659728 (-) True G2113211

Expression Profile