RNA id: TCONS_00055606


Basic Information

Item Value
RNA id TCONS_00055606
length 5533
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_028683
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16649542 ~ 16706978 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacaccaacatacTCAGTTTTCCGAAAGTCTCTGCACAAAATATTGACGATTACCTTTCCCTGAAACCGCGTTTTAGTTGATTTCGTTCGCCTGGAAACGCTGGATATGGAGCAGGTTGGTTCTGAATAACGGACGCGGACAAAGCGGATCATCTGTAGCCGTGATGAGCGCGACTATGAGCGGCTCTGGATCTGCGCCCTGCCGCTTTGCACATTACTTCATAGTATGCGGATTAGACGACGAAACGGGACTTGAACCCGATGCTTTGGCAGCTTTATACCAGTGGCTAGAGGCTGATCGGCAGGGCAAGGATCCAGAGGCCACAGCAGCAGGGGAAAACTTTGATCAGAGTCCCCTAAAAAGGACCTTCAAGTCTAAAGTGTTGGCTCACTACCCGGAGAACATTGAGTGCAACCCATTTGACCAGGATGCTGTTAACATGcTCTGTATGCCTAAAGGCCTGTCATTCAGGACGCAGCGGGACAGTCTGGCTCCGCACTTCCACTCGTTCCTCATCACCCGAGAGGACGGCTCACGGACTTACGGCTTCGTCCATACCTTCTATGAGGAGGTGACGAGTCCTCAGATCTGCTCCGCCATGCAGACGCTCCATCAGATGCACCAGGCTGAACACAACACATCTGCACAGAACTGTACTTCATCCTCctcatcatcctcctcctcctcttcctcctctagCATGGACTCTTTATCCAGCAGTCTGGATGACGTTGACTCTCCATCCGCTCATGGAGGCAGAAGAACCTGTGAAGGCTACGACTCGATCCGCGACACTCTTTATGTGTCCAAAGCCATGTGTTTGATTGCACCGATGCCCTTCATGCACGCTTGTAAACGTTTTTTGGCTCAAATGCACCGGGCTGTGAGCTGTAGTCCTCCGCCGCCACTTCCTCTAGAGAGTTACATCTATAACGTGTTGTATGAGGTGCCGCTGCCGGCGTCTGGACGCTCGCTCAAGTTTCATGGAGTTTATGAACCAATCCTGTGTCAGCGGCCGGGAGTCGGAGAGCTGCCATTGGCTGATTTTCCACTGGCCGACGCCTTCCGGTTACTGGGGGTGGAGAATCTGGTGCAGCTGTTCACCTGTGTCCTGCTGGAAATGCAGATTCTGCTGTACTCACAGGACTACCAGCGGCTCATGGTGGTTGCGGAGGGCATCACAACATTGCTCTTCCCTTTCCAGTGGCAGCACGTGTATGTCCCGATTCTCCCTGCTTCACTCCTGCACTTTCTAGACGCCCCTGTCCCATACCTCATGGGGCTTCAATCTAAAGAGGGCACTGACCGCTCCAAACTAGAGCTGCCTCAAGAGGCAAACCTGTGTTTCGTAGACATCGACAACCACTGCATCGAGCTTCCGGAAGACTTCCCTCAGTTTCCCAACAGGAGTGAGTTCATCCAGGAGCTGAGCGAGGTGCTGCTCAGTTTTGGCCAGTCTCCCGAAGGGGGTAGCAGCTCTCCTGAACCGGCCGTGATGAGCTTGCAGACCTCTGTGCTGGAGAAGGAGCTCAAGAGCACTTCGTTGAGAGAGTTGGTGGACGATAAGACGAACGGCAACCTCGGTGGAGAAGCGCTGGATGTGCTGGAGCTCCTGCAGGGCAACCCGACGCTGGAGCGCCTGCAGGCTTTGGCCAAGAGGACTGGGGTGAAAGTGGCCCGTCTGGAGGCGCTGGCAGCGGGACAGAAGGGGGATGAAGGTGTTGGAGGAAGGTCTCCTGTTGAGGAAGAGGAGCTGAGGAATGCTAAACTGAACGTTCAGCTGAGGGAGGTGTTCGCCGCACGCTTCGCAACGATGTTTGCAGACTACGAGTCGTTTGTGATTCAGAACTCGCCAGATTTGGAGTCTTGGCTGACCAACAGAGAGCAAATGCACAACTTTGACAAGGCCTCGTTTCTTTCGGACCAGCCGGAGCCATACCTGCCCTTTCTGTCTCATTTCATCGAAACCCAAATGTTTGCCACCTTCATCGACAACAAGATCATGTCTCAGTGGGAGGAAAAAGAGCCTCTCCTTCGGGTCTTTGATGGACGCATTGAGAAAGCCAGACTCTACAATGTCCGTGCACCCAGTTTACGCTCATCTGTTTACCAGAAATGCACTTTCCTCAAAGAATCAGCCCAGGCTATTGAGCAGCGGCTGAGAAAGATCGACCACACGGCCATCCATCCTCACCTGCTGGATATGAAGATTGGCCAGGGAAAATACCAGCAGGGCTTTTTCCCCAAACTGCAGGCAGATGTGTTAGCCTCTGGGCCCACCAGCAACAAGTGGTCAAATCGCACATGTTCGACTCAGCGCAGAGTGGAACGACACAGGCAGCAGAATGAACATCTGGTGCTGGACAATGAACTCAAAGAGAAGTACATGCAGGAGGCTCGTAACCTGGGGAAGAACCTGCGACAACCCAAATTATCAGACTTGTCCCCTGCCGTCATCGCACAGACCAACTGGAAGTTTGTGGAGGGTTTACTGAAGGAATGCAAGATGAAGACCAAGCGCATGTTGGTGGAGAAAATGGGGAGAGAAGCTGTCGAACTGGGTCACGGAGAGGCAAACATCACTGGTCTGGAAGAAAACACACTCATAGCCAGTCTGTGTGACCTGCTGGAGAGAATATGGAGCCACGGGCTTCAGGTTAAACAGGGAAAGTCTGCACTTTGGTCTCATTTATTGCATTACCAGGCGAGAGAAGAGAAAAACGAACAGCAGTTGGAGTCTCCGGTGTCTAATGGCCAGGAAAGACGGAAAACCGAGTCCAGCGTTGGTCTTCCTGGATTACGTGTGTCCGTCATACAGGATATGAGACACATCCAGAACATGGCAGAGATTAAGACTGATGTAGGTCGAGCACGTGCCTGGATCCGTCTGTCTCTGGAGAAAAAACTGCTTTCCCAGCACCTCAAACAGCTGCTGTCAAACCAGGCCTTAACCAAGAAGCTCTACAAACGTTACGCTTTTCTCCGCTGTGAAGAGGAGAAAGAGCAGTTTCTCTTTCATCTCCTGAGCCTGAATGCTGTGGACTACTTCTGCTTTACCAGCGTCTTCACTACTATAATGATCCCATACCGGGCTGTGATCATCCCCATCAAGAAGCTGAGTAACGCCATGACCACGTCCAACCCCTGGCTGTGTGTGTCGGGCGAGCTGGGCGACTCCGGCATCCTGCAGATCACCAAAAACATACTGGAGATGACATTCGACTGCCAGAATCTGGGCAAGCTGACCACTGTTCAGCTGGGTCATGATAACTCCGGCTTGCTGGCCAAGTGGCTGGTTGATTGCGTCATGGTCCGCAATGAGATCACCGGACACACATACAAGTTTCCCTGTGGCCGGTGGCTGGGAAAGGGTGTGGATGATGGCAGTCTGGAGCGAGTGCTGATTGGAGAGTTTGTGGTGCCTTGCGGCGATGATGAAGGAGGTCGAGGGTCTAAAACACCACCGCTCCAGAGGTCGCCCTCCCAGATCCGGAGAATCAGCATCACTTCACTCACCGGAAAAGGAAACAAACCAACAACCGTTCAGATCCAGGAATCTATCGGTGAAGCAGTCaacaatataattaaacattTCCACAAACCAGAGAAAGAGCGGGGCAGTCTCACGGTTCTGCTGTGTGGAGAAGGTGGTCTTGTTTGGGCGCTGGAGCAGTTTTTCCACCATGGGTTTCGCTCTGCTCGAATCTTCCAGAAAAATGTCTTTGTTTGGGATTTCTTTGAGAGAATAGTAGCGTTTATGGAGAACAGAGATCAAACTGGAGACCTGCAAGAATCCCCCGAGCCTCTCAGCCTGAATAGCGAATCACTCTGTCGATACGTCAACGCCATCAACAACATGCCACGCAACATCGGCAAAGACGGCAAATTCCAGCTGCTAGTTTGCCTCGGCGCGAGAGACCGATTATTACCCCAGTGGCTCCCTCTACTGGCTGAAAGCCCGGTCATCACGCGTATGTACGAAGAAAACGCTTTACTTCGAGACAAACTCACCGTAAGCTCTCTCCTCGGCGTCTTAGAAACGCTACATGATTTCCCCATTACCCTGGAGACTTCGCTTACAAAAAGCGTCGAGCTGTAATTCAGCGTGGCGAAGTTCAAACTCAGACTGCTTCAGGCCATCTTCAGGACTGAAACCGTATTACAAGTTTGCtgggttttttttgttgttttttttgcggAGATTGACTGAAGACTCTTCTTCGCCCCCAAAGAAATGAACTCTGAACTTCAGACGTGTGTTTTGTAGCAGTATTTGGAGTCGTGCTCTTTCTAGCCGAACGTTTTAAGAAGACCTGTGGATTTATTTAGCTTTCGAAAACCTGTGGTCGTTTGTCTGCGATCGAGTCGCATCTGCTTCAGATCATGCTCTGACTTTATAAAACACTATTTTGACAACTGCTGAGGAGCCTTAGTACGGACCTGTTATGTTCAGTTAATCAGAATCAAAGTGATTATACTTGACGAATTCACCCAACTTCGAGTGTTTATATGAACTTTAGCTGTTTAAACTGATGCTGTTTGTTGGCGAGTAATAGTTCCTGTTTTAAGGCTGTTCATACAGAATTTTCAAAGAAAATGGTCATTCCTATAGGATGTGAATCGCTGTATGTTACGAAATTTGTGATCCATGCGGTCTGGTTGAACACTTTAAGGAGATGTTTATTTTGCCAATGAGTATTAACTTCATTCTTAGCTACTTCGGTGGGTTTCAACTGGCTTACGTTCAAGAAAGAAACACTGGAAATCATTCAAAGCAATAACGAGCCCTTATTTGCCATAAACCTTCAATATACAGTATCCTGTGGGGTGTAAACCCTAGTATTTACCACTTAATTAAGCGTATTACTTTGTTAATCCGAGTTGATTACTACAGAACTTGCACAACGCTTAGTGATTAAGtaaaactcattttattttatgagcAGTTTTAATCCTTCTGAATGAAATTGACAATTGTTGCAGGATTAAAAATGGCTTTCGGTCACTtaacatttctttttgtttttaagacGCTCTGCATTTAATCCGTATGTATGCGAACACTTAacctgtgtgttttatttcatttctatatttcttTTATAGTAACTCGGATTGTTTGTAAGTATTTATTTTCAGAGGAATCTTTTGAGACACTGGTCGATTATCTTGGGGTTGCAGTAAGCTTacactgaatcatttatttattttaggtaaaCTACTTTATCATGGGTTCGGAGTGTGTGTATAGTGTCGAATCCCTCCTCATCTTGTGTAAAAAAGTCCATGAGGGAACTGTCCACCTGTTTGCGGTGCTGATGCATgcgacatgttttttttttatgtagatcTTGGAGAAGAAGTACTGTTGCTGTAAATGAATTGGTTCCTCTTCTAGATTCTTTCCGTCTCGTTGCATCAGTTTATTCCCTGTATAAAAGCGTTGATCATATTATGAAATGCTCCCGGGTTTCTCCgtcatgtttatatttgtgaAGCAGCTCATTAAAAGTGCTCCGTACATAAATCTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2248 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neural plate and tail bud. Orthologous to human DENND5B (DENN domain containing 5B).

Ensembl:

ensembl_id ENSDART00000033053

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057346 lncRNA downstream 206489 16439748 ~ 16443053 (-) False XLOC_028678
TCONS_00057345 lncRNA downstream 206489 16439748 ~ 16443053 (-) True XLOC_028678
TCONS_00058173 lncRNA downstream 206969 16411878 ~ 16442573 (-) False XLOC_028678
TCONS_00055592 lncRNA downstream 315710 16325613 ~ 16333832 (-) True XLOC_028675
TCONS_00055590 lncRNA downstream 326960 16320607 ~ 16322582 (-) False XLOC_028675
TCONS_00058174 lncRNA upstream 56764 16763705 ~ 16768876 (-) False XLOC_028684
TCONS_00058175 lncRNA upstream 56764 16763705 ~ 16769120 (-) False XLOC_028684
TCONS_00058176 lncRNA upstream 56764 16763705 ~ 16777643 (-) False XLOC_028684
TCONS_00058177 lncRNA upstream 56764 16763705 ~ 16777689 (-) False XLOC_028684
TCONS_00058178 lncRNA upstream 66069 16773010 ~ 16777647 (-) False XLOC_028684
TCONS_00055605 mRNA downstream 4834 16635446 ~ 16644708 (-) True XLOC_028682
TCONS_00055604 mRNA downstream 7800 16631483 ~ 16641742 (-) False XLOC_028682
TCONS_00055603 mRNA downstream 20740 16615027 ~ 16628802 (-) True XLOC_028681
TCONS_00055602 mRNA downstream 20741 16615026 ~ 16628801 (-) False XLOC_028681
TCONS_00055601 mRNA downstream 104457 16536173 ~ 16545085 (-) True XLOC_028680
TCONS_00055611 mRNA upstream 77031 16783972 ~ 16824556 (-) False XLOC_028684
TCONS_00055612 mRNA upstream 81711 16788652 ~ 16824556 (-) False XLOC_028684
TCONS_00055613 mRNA upstream 93358 16800299 ~ 16824231 (-) True XLOC_028684
TCONS_00055614 mRNA upstream 121811 16828752 ~ 16833518 (-) False XLOC_028685
TCONS_00055615 mRNA upstream 122163 16829104 ~ 16836006 (-) True XLOC_028685
TCONS_00055587 other downstream 436002 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 641375 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 889869 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 1904851 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 2204767 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 550419 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 1020445 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 1029502 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 1208991 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 1292576 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile

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