RNA id: TU2413642



Basic Information


Item Value
RNA id TU2413642
length 391
RNA type TUCP
GC content 0.47
exon number 1
gene id G2110507
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16448112 ~ 16448502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAAATCCTGCATGAATTCATATATATTGATGAGGCAGGGTTAAACCTCACAAAAGCAAGAAGGAGAGGCAGAAATATCATTGGCCACAGGGCTATAatcaatgtcccagggcaacgtGGGGGTAACATCACCCTTTGCGCTGCCATTTCACAGCATGGGGTTGTCCTCCGTCATGCCAAAATGGGCCCTTACAACACACCTCACATTCTCGCATTTTTGGACCAATTGCACCACATCGTCACAGCAGGTAATGAAATGTACCAGATGCAATACACGGTCATCTGGGACAATGTGTCATTCCACTGCTCTGCTTTGGTCCAGAACTGGTTTCAACACCATCCACAGTTGGCAGTACTATACCTTCCACCATACTCTCCGTTTCTAAACCCT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2413637 lncRNA upstream 2489 16445264 ~ 16445623 (+) True G2110502
TU2413630 lncRNA upstream 6755 16441140 ~ 16441357 (+) True G2110495
TU2413566 lncRNA upstream 45391 16402483 ~ 16402721 (+) True G2110432
TU2413411 lncRNA upstream 177499 16270399 ~ 16270613 (+) True G2110278
TU2413225 lncRNA upstream 302903 16143168 ~ 16145209 (+) True G2110101
TU2413666 lncRNA downstream 31298 16479800 ~ 16517301 (+) True G2110531
TU2413704 lncRNA downstream 108919 16557421 ~ 16557625 (+) True G2110569
TU2413710 lncRNA downstream 114903 16563405 ~ 16563829 (+) True G2110575
TU2414024 lncRNA downstream 309190 16757692 ~ 16757929 (+) True G2110881
TU2414034 lncRNA downstream 317693 16766195 ~ 16766395 (+) True G2110890
LOC110508172 mRNA upstream 151833 16295344 ~ 16296279 (+) True LOC110508172
XM_021589302.2 mRNA upstream 254985 16170026 ~ 16193127 (+) False LOC110508638
XM_021589300.2 mRNA upstream 254986 16170575 ~ 16193126 (+) True LOC110508638
XM_021589301.2 mRNA upstream 261273 16170575 ~ 16186839 (+) False LOC110508638
XM_021589297.2 mRNA upstream 308360 16133508 ~ 16139752 (+) True LOC110508636
XM_036965888.1 mRNA downstream 9710 16458212 ~ 16541579 (+) True LOC110508639
XM_036966542.1 mRNA downstream 360969 16809471 ~ 16813125 (+) False LOC110508278
XM_021589308.2 mRNA downstream 375757 16824259 ~ 16839283 (+) False LOC110508640
XM_021589305.2 mRNA downstream 376510 16825012 ~ 16839283 (+) False LOC110508640
XM_021589307.2 mRNA downstream 376513 16825015 ~ 16839283 (+) False LOC110508640
TU2413068 other upstream 499251 15948308 ~ 15948861 (+) True G2109955
TU2413061 other upstream 509255 15938511 ~ 15938857 (+) True G2109948
TU2409894 other upstream 2534885 13911427 ~ 13913227 (+) True G2107033
TU2409352 other upstream 3304517 13143313 ~ 13143595 (+) True G2106557
TU2409341 other upstream 3313627 13133894 ~ 13134485 (+) True G2106549
TU2414093 other downstream 364092 16812594 ~ 16812796 (+) True LOC110508278
TU2414198 other downstream 505282 16953784 ~ 16958852 (+) True G2111044
TU2414472 other downstream 962642 17411144 ~ 17416232 (+) True G2111300
TU2414638 other downstream 1259754 17708256 ~ 17708629 (+) True G2111457
TU2414674 other downstream 1306435 17754937 ~ 17755581 (+) True G2111491

Expression Profile


TU2413642 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU2413642 Expression in each Bioproject

Bar chart with 20 bars.
TU2413642 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.