RNA id: TU2414694


Basic Information

Item Value
RNA id TU2414694
length 2323
lncRNA type read_through
GC content 0.43
exon number 2
gene id G2111499
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16894939 ~ 16925687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGTTTTTCCAGTGACATACTGTACCATTTAACATCACAGTGACACTTACAGTAACAACCCCATCATATTGGCTACAGGGTGCTGAATGAAAAACAAAACATTAATTACAAGATATGTACTACAGTATACCAAGGTTAGTATCTTTGAGGCTGACTGGAAATCAATGATATACTTCTCTTCTCTGTAACATGTGAATGGTGTCCATGTAGTAATAGTGTATCAAGCCCAAGGTTTAATAGAATAACACAACTAGTCTGTACAAGCGTAAGATGCTGCATGACATTAATGGAAATGTATCTCAAAGCCTCACAACACACTCCCTCTGAGTGTTTCATGTGATATTGTACCTAACTCACATTCGGTTGGTGGTAACGTACAACATGACAATTTGAATTACACGTTTATTCTGGGGGGGAAATGGCTtacgtcattgtaaagaagactCCATCAGACTGAAATAATCTTATGTGGGACTGATTATACTGAATGTACGAGTGAGTCTGATTGGACAGTCTGTGGTCAAAGCACTCCCCCAGACCCATAATGGGAATATTCAGTATGGACATAATGTTCATAAAGTTGCAAATAAAAAATGTTATGTATCGAGCAGACACTATTCTCCATCACATGGAACAGAGATCTGTGTCGGATGTACATTAAGACATATGTTTGGAATTTCGCCCAACTGAATAAAGCTCTTAACCAGCTGTCCAATAACAGAGCACACTGAAGCGTCAAGGCCATATTCTGACAACAGATACTGTAGATGCTACTGACTTTAACCTTTAGGAGTAGCAGGGGGCATTGGAAGCATTCAGGTGCcctattcataaagcgtctcagagtaggagtgctgatcttggGTCCATGTAGTCCTTCACACTGTGATCGCCAAGTAAAAACTGATCGCAAATCAGCTATCCTAAACAGACACTTTACGAGTTTGGGCTCAGCGCGGttttacatacatacagtgcattcggaaagtatttacacaccttcactttttccatattttgtaacgttacaaccttatgctaaaatggatttaataaaataaaaactcaatctacacacaataccccataattaaaaagagaaaacaggtttttaataaACATTtgcaaattgttttttttttttttttacagaaataccctatttacataactactcagaccctttgctactgGACTCgagattgagctcaggtgcatcctgtttccattgatcatcattgagatgtttctgcaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacacacatgtctaagtaaggtcctacagttgacagtgcatgttagagcaaaaaccaagccataaggtagaagcaattgtccgtagagctgagacatttctgcatcattgaaggtccccaagaacacagtggcctccattcttaaatggaagtttggaaccaccaagactcttcatagagctgagcaatcgggagagaaggaccttggtcagggaggtgcctaagaacccaatggtcattctgacagagctccagagttcctctgtggagatgggagaatgttccaggaggacaaccatctctgtagctcaccaccaagcaggcctttatggtagtggtcagaaggaagccactcctcagtaaaaggcacagcagcccgcttggaatttgccaaaaggcacctaaaggatttaagattctctggtctgatgaaaccaagattgaactcattggcctgaatgccaagcgtcacatctggaggaaacctggcagcatcatgtcgggatgtttttcagcagcagggactggtagactaatcaggatcgagggaaagatgaatggagcaaagtacagagatccttgatgaaaacctgctccagagcgctcaggacctcaataCTGGgcagaaggttcaccttccaacaggacaacgaccctaagcacaagaCAGGAGTGGATTCTGGACAGGTCTCAAAGTcattgagtggctcagccagagcctggagttgaacccgatcaaacatctctggagacctgaaaatagctgtgcagcgacactccccatccaacctgacaaagcatgagaggatctgcaaagaagaaccggataaactccccaaatacagtggggcaaaaaaCTACCCAGCcatttggcatgagtcctcaaACTGATAACCCAACAATGCTGCTAAAGTAACCCCTGCTACTCCTAACATGGCCCATGACTATAGCCTCCTTCAATTACTGTCCCTACAAATCAAATCAGACTTTATTTGcgacatgcgccgaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414698 lncRNA downstream 54716 16840013 ~ 16840223 (-) True G2111501
TU2414132 lncRNA downstream 58086 16836228 ~ 16836853 (-) True G2110980
TU2414130 lncRNA downstream 58327 16835836 ~ 16836612 (-) False G2110980
TU2414129 lncRNA downstream 58327 16836228 ~ 16836612 (-) False G2110980
TU2414131 lncRNA downstream 58327 16836228 ~ 16836612 (-) False G2110980
TU2414765 lncRNA upstream 13342 16939029 ~ 16939257 (-) True G2111565
TU2414773 lncRNA upstream 32660 16958347 ~ 16963196 (-) True G2111573
TU2414858 lncRNA upstream 227458 17153145 ~ 17154914 (-) True G2111655
TU2414903 lncRNA upstream 253651 17179338 ~ 17179540 (-) True G2111700
TU2414949 lncRNA upstream 307883 17233570 ~ 17253437 (-) True G2111742
XR_002471338.2 mRNA downstream 66662 16819286 ~ 16828277 (-) False LOC110508642
XM_021589299.2 mRNA downstream 743182 16143163 ~ 16151757 (-) True LOC110508637
XM_021589291.2 mRNA downstream 840593 16029118 ~ 16054346 (-) True LOC110508634
XM_021589288.2 mRNA downstream 876989 15934185 ~ 16017950 (-) False LOC110508633
XM_021589323.2 mRNA upstream 328632 17254319 ~ 17260420 (-) False LOC110508646
XM_036966580.1 mRNA upstream 337536 17263223 ~ 17275074 (-) False LOC110508647
XM_036966576.1 mRNA upstream 337536 17263223 ~ 17285016 (-) False LOC110508647
XM_036966577.1 mRNA upstream 337536 17263223 ~ 17285049 (-) False LOC110508647
XM_021589326.2 mRNA upstream 337536 17263223 ~ 17285063 (-) False LOC110508647
TU2414083 other downstream 95070 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 1184010 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 1290476 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 1340042 15539768 ~ 15554897 (-) True G2109663
TU2408125 other downstream 5394867 11499126 ~ 11500072 (-) True G2105419
TU2414937 other upstream 330521 17256208 ~ 17257395 (-) True LOC110508646
TU2416252 other upstream 1535487 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 1573854 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 1731866 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 1816231 18741918 ~ 18742284 (-) True G2113287

Expression Profile