Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055610 |
| length | 923 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 4 |
| gene id | XLOC_028683 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 16649542 ~ 16706978 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005085 | guanyl-nucleotide exchange factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-2248 | Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neural plate and tail bud. Orthologous to human DENND5B (DENN domain containing 5B). |
| ensembl_id | ENSDART00000141119 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00057346 | lncRNA | downstream | 237407 | 16439748 ~ 16443053 (-) | False | XLOC_028678 |
| TCONS_00057345 | lncRNA | downstream | 237407 | 16439748 ~ 16443053 (-) | True | XLOC_028678 |
| TCONS_00058173 | lncRNA | downstream | 237887 | 16411878 ~ 16442573 (-) | False | XLOC_028678 |
| TCONS_00055592 | lncRNA | downstream | 346628 | 16325613 ~ 16333832 (-) | True | XLOC_028675 |
| TCONS_00055590 | lncRNA | downstream | 357878 | 16320607 ~ 16322582 (-) | False | XLOC_028675 |
| TCONS_00058174 | lncRNA | upstream | 56727 | 16763705 ~ 16768876 (-) | False | XLOC_028684 |
| TCONS_00058175 | lncRNA | upstream | 56727 | 16763705 ~ 16769120 (-) | False | XLOC_028684 |
| TCONS_00058176 | lncRNA | upstream | 56727 | 16763705 ~ 16777643 (-) | False | XLOC_028684 |
| TCONS_00058177 | lncRNA | upstream | 56727 | 16763705 ~ 16777689 (-) | False | XLOC_028684 |
| TCONS_00058178 | lncRNA | upstream | 66032 | 16773010 ~ 16777647 (-) | False | XLOC_028684 |
| TCONS_00055609 | mRNA | downstream | 21946 | 16654418 ~ 16658514 (-) | False | XLOC_028683 |
| TCONS_00055605 | mRNA | downstream | 35752 | 16635446 ~ 16644708 (-) | True | XLOC_028682 |
| TCONS_00055604 | mRNA | downstream | 38718 | 16631483 ~ 16641742 (-) | False | XLOC_028682 |
| TCONS_00055603 | mRNA | downstream | 51658 | 16615027 ~ 16628802 (-) | True | XLOC_028681 |
| TCONS_00055602 | mRNA | downstream | 51659 | 16615026 ~ 16628801 (-) | False | XLOC_028681 |
| TCONS_00055611 | mRNA | upstream | 76994 | 16783972 ~ 16824556 (-) | False | XLOC_028684 |
| TCONS_00055612 | mRNA | upstream | 81674 | 16788652 ~ 16824556 (-) | False | XLOC_028684 |
| TCONS_00055613 | mRNA | upstream | 93321 | 16800299 ~ 16824231 (-) | True | XLOC_028684 |
| TCONS_00055614 | mRNA | upstream | 121774 | 16828752 ~ 16833518 (-) | False | XLOC_028685 |
| TCONS_00055615 | mRNA | upstream | 122126 | 16829104 ~ 16836006 (-) | True | XLOC_028685 |
| TCONS_00055587 | other | downstream | 466920 | 16213424 ~ 16213540 (-) | True | XLOC_028672 |
| TCONS_00055582 | other | downstream | 672293 | 16003900 ~ 16008167 (-) | False | XLOC_028666 |
| TCONS_00055578 | other | downstream | 920787 | 15757435 ~ 15759673 (-) | False | XLOC_028663 |
| TCONS_00055559 | other | downstream | 1935769 | 14744576 ~ 14744691 (-) | True | XLOC_028647 |
| TCONS_00055550 | other | downstream | 2235685 | 14437242 ~ 14444775 (-) | True | XLOC_028642 |
| TCONS_00055632 | other | upstream | 550382 | 17257360 ~ 17260959 (-) | False | XLOC_028692 |
| TCONS_00055646 | other | upstream | 1020408 | 17727386 ~ 17740785 (-) | False | XLOC_028701 |
| TCONS_00055647 | other | upstream | 1029465 | 17736443 ~ 17737812 (-) | True | XLOC_028702 |
| TCONS_00055657 | other | upstream | 1208954 | 17915932 ~ 17949318 (-) | False | XLOC_028708 |
| TCONS_00055658 | other | upstream | 1292539 | 17999517 ~ 18038547 (-) | False | XLOC_028708 |
