RNA id: TU2415277


Basic Information

Item Value
RNA id TU2415277
length 232
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2112018
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17777055 ~ 17777286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGAATTGATGCGTCTTGCTGACAAAATGGCATTTTTTTTGTAGAAAGAAAAGTTGGGACACCAAAAAAGGGGCTGAAATACAGGACTGTCCAGGGATGACAAGTGCAGCAAAAGGGGCAAAATGGTTTAAACTAGTCCTTGCATGcatagttctgtctatgaatttaagAGTGGTTACACTTCTCCAGCCCCATGGTCTAGATTTAAAGAGGGAGTGTCTACCCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2415275 lncRNA downstream 900 17775887 ~ 17776155 (-) True G2112016
TU2415266 lncRNA downstream 8142 17768620 ~ 17768913 (-) True G2112007
TU2415249 lncRNA downstream 51152 17725662 ~ 17725903 (-) True G2111992
TU2415215 lncRNA downstream 64776 17711875 ~ 17712279 (-) True G2111960
TU2415237 lncRNA downstream 79382 17697378 ~ 17697673 (-) True G2111981
TU2415294 lncRNA upstream 12745 17790031 ~ 17790318 (-) True G2112035
TU2415323 lncRNA upstream 33816 17811102 ~ 17811689 (-) True G2112062
TU2415504 lncRNA upstream 39320 17816606 ~ 17816841 (-) True G2112232
TU2415617 lncRNA upstream 172278 17949564 ~ 17953069 (-) False G2112324
TU2415618 lncRNA upstream 172278 17949564 ~ 17953069 (-) True G2112324
XM_036966413.1 mRNA downstream 9715 17628997 ~ 17767340 (-) False LOC110508653
XM_021589340.2 mRNA upstream 209776 17987062 ~ 18074154 (-) False LOC110508654
XM_021589342.2 mRNA upstream 209783 17987069 ~ 18030222 (-) False LOC110508654
XM_021589343.2 mRNA upstream 209783 17987069 ~ 18031387 (-) False LOC110508654
XM_021589341.2 mRNA upstream 209783 17987069 ~ 18074154 (-) True LOC110508654
XM_021589349.2 mRNA upstream 325260 18102546 ~ 18175569 (-) False LOC110508658
TU2414937 other downstream 519660 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 977186 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 2066126 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 2172592 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 2222158 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 683888 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 722255 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 880267 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 964632 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 1007611 18784897 ~ 18785322 (-) True G2113320

Expression Profile