RNA id: TU2415504



Basic Information


Item Value
RNA id TU2415504
length 236
lncRNA type intronic
GC content 0.39
exon number 1
gene id G2112232
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17816606 ~ 17816841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAGTTCATTTAATcagattgtcataaggttccatgactttgtccacaaagGGCATCTGAACACAGAAGATACATGTTGATGATCTTCATAACATTTAGTGTTTTATTTAACCTGTGGTGTTCCCAGTCTaaaatgaccggtcattagaaatgaatgggtgagtctacaattagtgtataaaattgagttcaggcacatgcccatccatcagatggacacacttcctctcccagacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2415323 lncRNA downstream 4917 17811102 ~ 17811689 (-) True G2112062
TU2415294 lncRNA downstream 26288 17790031 ~ 17790318 (-) True G2112035
TU2415277 lncRNA downstream 39320 17777055 ~ 17777286 (-) True G2112018
TU2415275 lncRNA downstream 40451 17775887 ~ 17776155 (-) True G2112016
TU2415266 lncRNA downstream 47693 17768620 ~ 17768913 (-) True G2112007
TU2415617 lncRNA upstream 132723 17949564 ~ 17953069 (-) False G2112324
TU2415618 lncRNA upstream 132723 17949564 ~ 17953069 (-) True G2112324
TU2415917 lncRNA upstream 350998 18167839 ~ 18228651 (-) False G2112604
TU2415941 lncRNA upstream 398706 18215547 ~ 18217048 (-) False LOC118944819
TU2415943 lncRNA upstream 398706 18215547 ~ 18217048 (-) True LOC118944819
XM_036966413.1 mRNA downstream 49266 17628997 ~ 17767340 (-) False LOC110508653
XM_021589340.2 mRNA upstream 170221 17987062 ~ 18074154 (-) False LOC110508654
XM_021589342.2 mRNA upstream 170228 17987069 ~ 18030222 (-) False LOC110508654
XM_021589343.2 mRNA upstream 170228 17987069 ~ 18031387 (-) False LOC110508654
XM_021589341.2 mRNA upstream 170228 17987069 ~ 18074154 (-) True LOC110508654
XM_021589349.2 mRNA upstream 285705 18102546 ~ 18175569 (-) False LOC110508658
TU2414937 other downstream 559211 17256208 ~ 17257395 (-) True LOC110508646
TU2414083 other downstream 1016737 16799390 ~ 16799869 (-) True G2110939
TU2412853 other downstream 2105677 15703336 ~ 15710929 (-) True LOC110508627
TU2412794 other downstream 2212143 15603685 ~ 15604463 (-) True G2109705
TU2412752 other downstream 2261709 15539768 ~ 15554897 (-) True G2109663
TU2416252 other upstream 644333 18461174 ~ 18461538 (-) True G2112905
TU2416270 other upstream 682700 18499541 ~ 18499966 (-) True G2112922
TU2416574 other upstream 840712 18657553 ~ 18659728 (-) True G2113211
TU2416653 other upstream 925077 18741918 ~ 18742284 (-) True G2113287
TU2416687 other upstream 968056 18784897 ~ 18785322 (-) True G2113320

Expression Profile