RNA id: TCONS_00058178



Basic Information


Item Value
RNA id TCONS_00058178
length 409
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id XLOC_028684
representative False

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16763705 ~ 16824556 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GACGCCGCCTAGTGGAGCGGAAGTGAATCAGTGTCAGTAGTTTTAATGCATGAAAACAAACTAGAAGTGTGTCGTTGGAGACGGGATGcgtttttagttttatatatattaaatcacGTCTGTGATCTTCTTTAAATGGTCTCAAGCAGCAGATAAACATGGCATCTAACGGATGATCAGCTTCTCAACTGAAAGGAGTAAAGGATGTGTTTGGAGCATCACACACATCCAGCAGAGGCATGTGGACAGACATCGACTATGATGATGCTCATCTGCTGAAGGACAGCAGGTTCGAGTGAATCTTTCTCTGTGTCTCTGATGAGGAGGATGTGAAGCTCAGGACTGGTCATCATATCAACACATCAATCTACAGACAAACATCACATTTAATAAAGATTTAATGAAGAAA

Function


GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0000387 spliceosomal snRNP assembly biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0022008 neurogenesis biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005682 U5 snRNP cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0071949 FAD binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00058175 lncRNA downstream 3890 16763705 ~ 16769120 (-) False XLOC_028684
TCONS_00058174 lncRNA downstream 4134 16763705 ~ 16768876 (-) False XLOC_028684
TCONS_00057346 lncRNA downstream 329957 16439748 ~ 16443053 (-) False XLOC_028678
TCONS_00057345 lncRNA downstream 329957 16439748 ~ 16443053 (-) True XLOC_028678
TCONS_00058173 lncRNA downstream 330437 16411878 ~ 16442573 (-) False XLOC_028678
TCONS_00058181 lncRNA upstream 1376 16779023 ~ 16784434 (-) False XLOC_028684
TCONS_00057347 lncRNA upstream 335732 17113379 ~ 17216173 (-) False XLOC_028690
TCONS_00055626 lncRNA upstream 387997 17165644 ~ 17182108 (-) False XLOC_028690
TCONS_00055627 lncRNA upstream 403798 17181445 ~ 17216198 (-) False XLOC_028690
TCONS_00057348 lncRNA upstream 403937 17181584 ~ 17216173 (-) False XLOC_028690
TCONS_00055607 mRNA downstream 66032 16649542 ~ 16706978 (-) False XLOC_028683
TCONS_00055610 mRNA downstream 66032 16680460 ~ 16706978 (-) True XLOC_028683
TCONS_00055606 mRNA downstream 66069 16649542 ~ 16706941 (-) False XLOC_028683
TCONS_00055611 mRNA upstream 6325 16783972 ~ 16824556 (-) False XLOC_028684
TCONS_00055612 mRNA upstream 11005 16788652 ~ 16824556 (-) False XLOC_028684
TCONS_00055613 mRNA upstream 22652 16800299 ~ 16824231 (-) True XLOC_028684
TCONS_00055614 mRNA upstream 51105 16828752 ~ 16833518 (-) False XLOC_028685
TCONS_00055615 mRNA upstream 51457 16829104 ~ 16836006 (-) True XLOC_028685
TCONS_00055587 other downstream 559470 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 764843 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 1013337 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 2028319 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 2328235 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 479713 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 949739 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 958796 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 1138285 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 1221870 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile


Expression of TCONS_00058178 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.
//

Expression of TCONS_00058178 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.