Item | Value |
---|---|
RNA id | TCONS_00058178 |
length | 409 |
lncRNA type | antisense_over |
GC content | 0.41 |
exon number | 3 |
gene id | XLOC_028684 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007115.7 |
NCBI id | CM002888.2 |
chromosome length | 78093715 |
location | 16763705 ~ 16824556 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0072329 | monocarboxylic acid catabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0009056 | catabolic process | biological_process |
GO:1901565 | organonitrogen compound catabolic process | biological_process |
GO:0000387 | spliceosomal snRNP assembly | biological_process |
GO:1901575 | organic substance catabolic process | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0044248 | cellular catabolic process | biological_process |
GO:0046395 | carboxylic acid catabolic process | biological_process |
GO:0044282 | small molecule catabolic process | biological_process |
GO:0022008 | neurogenesis | biological_process |
GO:0016054 | organic acid catabolic process | biological_process |
GO:0071013 | catalytic step 2 spliceosome | cellular_component |
GO:0030532 | small nuclear ribonucleoprotein complex | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005682 | U5 snRNP | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
GO:0005686 | U2 snRNP | cellular_component |
GO:0097525 | spliceosomal snRNP complex | cellular_component |
GO:0071949 | FAD binding | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00058175 | lncRNA | downstream | 3890 | 16763705 ~ 16769120 (-) | False | XLOC_028684 |
TCONS_00058174 | lncRNA | downstream | 4134 | 16763705 ~ 16768876 (-) | False | XLOC_028684 |
TCONS_00057346 | lncRNA | downstream | 329957 | 16439748 ~ 16443053 (-) | False | XLOC_028678 |
TCONS_00057345 | lncRNA | downstream | 329957 | 16439748 ~ 16443053 (-) | True | XLOC_028678 |
TCONS_00058173 | lncRNA | downstream | 330437 | 16411878 ~ 16442573 (-) | False | XLOC_028678 |
TCONS_00058181 | lncRNA | upstream | 1376 | 16779023 ~ 16784434 (-) | False | XLOC_028684 |
TCONS_00057347 | lncRNA | upstream | 335732 | 17113379 ~ 17216173 (-) | False | XLOC_028690 |
TCONS_00055626 | lncRNA | upstream | 387997 | 17165644 ~ 17182108 (-) | False | XLOC_028690 |
TCONS_00055627 | lncRNA | upstream | 403798 | 17181445 ~ 17216198 (-) | False | XLOC_028690 |
TCONS_00057348 | lncRNA | upstream | 403937 | 17181584 ~ 17216173 (-) | False | XLOC_028690 |
TCONS_00055607 | mRNA | downstream | 66032 | 16649542 ~ 16706978 (-) | False | XLOC_028683 |
TCONS_00055610 | mRNA | downstream | 66032 | 16680460 ~ 16706978 (-) | True | XLOC_028683 |
TCONS_00055606 | mRNA | downstream | 66069 | 16649542 ~ 16706941 (-) | False | XLOC_028683 |
TCONS_00055611 | mRNA | upstream | 6325 | 16783972 ~ 16824556 (-) | False | XLOC_028684 |
TCONS_00055612 | mRNA | upstream | 11005 | 16788652 ~ 16824556 (-) | False | XLOC_028684 |
TCONS_00055613 | mRNA | upstream | 22652 | 16800299 ~ 16824231 (-) | True | XLOC_028684 |
TCONS_00055614 | mRNA | upstream | 51105 | 16828752 ~ 16833518 (-) | False | XLOC_028685 |
TCONS_00055615 | mRNA | upstream | 51457 | 16829104 ~ 16836006 (-) | True | XLOC_028685 |
TCONS_00055587 | other | downstream | 559470 | 16213424 ~ 16213540 (-) | True | XLOC_028672 |
TCONS_00055582 | other | downstream | 764843 | 16003900 ~ 16008167 (-) | False | XLOC_028666 |
TCONS_00055578 | other | downstream | 1013337 | 15757435 ~ 15759673 (-) | False | XLOC_028663 |
TCONS_00055559 | other | downstream | 2028319 | 14744576 ~ 14744691 (-) | True | XLOC_028647 |
TCONS_00055550 | other | downstream | 2328235 | 14437242 ~ 14444775 (-) | True | XLOC_028642 |
TCONS_00055632 | other | upstream | 479713 | 17257360 ~ 17260959 (-) | False | XLOC_028692 |
TCONS_00055646 | other | upstream | 949739 | 17727386 ~ 17740785 (-) | False | XLOC_028701 |
TCONS_00055647 | other | upstream | 958796 | 17736443 ~ 17737812 (-) | True | XLOC_028702 |
TCONS_00055657 | other | upstream | 1138285 | 17915932 ~ 17949318 (-) | False | XLOC_028708 |
TCONS_00055658 | other | upstream | 1221870 | 17999517 ~ 18038547 (-) | False | XLOC_028708 |