RNA id: TU2416413



Basic Information


Item Value
RNA id TU2416413
length 1382
RNA type TUCP
GC content 0.43
exon number 1
gene id G2113059
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18667115 ~ 18668496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agaagttttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttggaagcttatgataggctaattcacatcatttgagtcaatttgaggtgtaccagtggatgtatttcaaggcctaccttcaaactcagtgccgcttttcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaataaattgtagacctccacaagtctgggtgcctgaaggtaccatgttcatctgtacaaacaatagtatgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagcctagagattaacgtactttagtgagaaagtgcaaatcaatcccagaacaacagcaaaggacattgaagatgctggaggaaactggtatcTTTAAACCACAGTATAAATAGTCTTAAAAGAaaccaaaaccgccataaaaaatccagactacggtttgcaactgcacatggggacaaagatcgtaccttttggagaaatatcctctggtctgatgaaacagaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaggggggtgcttgcaagccgaagaacaccagcccaaccgtgaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggaggaactgatgcacttcacaaaatagatggcatcatgagggagggaaattatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgctcccaagcatacttccaaagttgttgcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcatatagaaaatttgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaaccttactcagttacaccagctctgtcaggaggaatggaccaaaattcacccaacttattgtgggaagcttgtggaaggctacccgaaacaattgacccaagttaaacaatttgaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgatccactgggaatgtgatgaaagaaatgaaagctgataTAAAGCATTCTCTGCCACACCCTgcccatagtttgctttgtatgtttctatgtttggtcagggtgtttggtcagggtgtgatctgagtgggcattcgaTGTTGtgtgtctatttctatgtttggttctcaatcagaggcaggtgttagtcattgtctctgattgggaaccatatttaggtagcctgttttgtgttgggttttgtggg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2416391 lncRNA upstream 39958 18602787 ~ 18627157 (+) True G2113037
TU2416344 lncRNA upstream 95935 18570906 ~ 18571180 (+) True G2112996
TU2416327 lncRNA upstream 105525 18561307 ~ 18561590 (+) True G2112979
TU2416324 lncRNA upstream 108273 18558622 ~ 18558842 (+) True G2112976
TU2416322 lncRNA upstream 109306 18557598 ~ 18557809 (+) True G2112974
TU2416435 lncRNA downstream 35188 18703684 ~ 18703950 (+) True G2113081
TU2416442 lncRNA downstream 71752 18740248 ~ 18740739 (+) True G2113088
TU2416370 lncRNA downstream 100343 18768839 ~ 18769063 (+) True G2113017
TU2416443 lncRNA downstream 109994 18778490 ~ 18778729 (+) True G2113089
TU2416444 lncRNA downstream 119250 18787746 ~ 18787986 (+) True G2113090
XM_036967035.1 mRNA upstream 8555 18579463 ~ 18658560 (+) False LOC110508667
XM_021589369.2 mRNA upstream 8555 18579464 ~ 18658560 (+) False LOC110508667
XM_021589370.2 mRNA upstream 8555 18579465 ~ 18658560 (+) False LOC110508667
XM_036967036.1 mRNA upstream 8555 18579466 ~ 18658560 (+) True LOC110508667
XM_021589358.2 mRNA upstream 247108 18406183 ~ 18420007 (+) True LOC100136150
XM_021589376.2 mRNA downstream 4806 18673302 ~ 18724171 (+) False LOC110508668
XM_021589371.2 mRNA downstream 26016 18694512 ~ 18724171 (+) False LOC110508668
XM_021589372.2 mRNA downstream 26016 18694512 ~ 18724171 (+) False LOC110508668
XM_021589374.2 mRNA downstream 26016 18694512 ~ 18724171 (+) False LOC110508668
XM_021589375.2 mRNA downstream 26016 18694512 ~ 18724171 (+) True LOC110508668
TU2415395 other upstream 763191 17903198 ~ 17903924 (+) True G2112127
TU2414674 other upstream 911534 17754937 ~ 17755581 (+) True G2111491
TU2414638 other upstream 958486 17708256 ~ 17708629 (+) True G2111457
TU2414472 other upstream 1250883 17411144 ~ 17416232 (+) True G2111300
TU2414198 other upstream 1708263 16953784 ~ 16958852 (+) True G2111044
TU2416973 other downstream 407581 19076077 ~ 19076418 (+) True G2113578
TU2417581 other downstream 954972 19623468 ~ 19636753 (+) True LOC110508695
TU2418949 other downstream 1773237 20441733 ~ 20442169 (+) True G2115369
TU2419398 other downstream 2172074 20840570 ~ 20842003 (+) True LOC110508722
TU2420043 other downstream 2705999 21374495 ~ 21375078 (+) True G2116347

Expression Profile


TU2416413 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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TU2416413 Expression in each Bioproject

Bar chart with 21 bars.
TU2416413 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.