RNA id: TU2416670


Basic Information

Item Value
RNA id TU2416670
length 469
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2113303
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18768251 ~ 18768719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatttacacactttcaatatttggaagaccctcagtcctctatcaaatgaaatctatttatatagcctcagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggcaaaaacctaggaagaaacctagagaggaaccaggctatgaggagtggccagtcctcttctggctgtgccgggtggagatcacagtgcttgtagagggtgcaacaggacagcacctcaagagtaaaaatgaacagtttagggttccatagccgcaggcagaacagttgaaactggaacagcggcaaggccaggtagactggggacagcaaggagtcatcatgccaggtagtcctgaggcatggtcctaggactcaggtcctccgagagagagaaagagagaattagagagagcatacttaaattcacacaggacaccggataaaagAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416658 lncRNA downstream 19722 18748247 ~ 18748529 (-) True G2113292
TU2416654 lncRNA downstream 24218 18743788 ~ 18744033 (-) True G2113288
TU2416652 lncRNA downstream 28104 18739737 ~ 18740147 (-) True G2113286
TU2416650 lncRNA downstream 31589 18736367 ~ 18736662 (-) True G2113284
TU2416649 lncRNA downstream 31997 18736049 ~ 18736254 (-) True G2113283
TU2416674 lncRNA upstream 4996 18773715 ~ 18774164 (-) True G2113307
TU2416675 lncRNA upstream 5464 18774183 ~ 18774400 (-) True G2113308
TU2416676 lncRNA upstream 5869 18774588 ~ 18774859 (-) True G2113309
TU2416678 lncRNA upstream 8001 18776720 ~ 18777039 (-) True G2113311
TU2416679 lncRNA upstream 9132 18777851 ~ 18778215 (-) True G2113312
XM_021589368.2 mRNA downstream 251054 18484345 ~ 18517197 (-) True LOC110508666
XM_036967039.1 mRNA downstream 286918 18428824 ~ 18481333 (-) False LOC110508665
XM_021589379.2 mRNA upstream 69594 18838313 ~ 18849108 (-) False LOC110508670
XM_021589378.2 mRNA upstream 69594 18838313 ~ 18849139 (-) True LOC110508670
XM_021589380.2 mRNA upstream 96120 18864839 ~ 18879323 (-) True LOC110508671
XM_036966604.1 mRNA upstream 111971 18880690 ~ 18927009 (-) False LOC110508176
XM_036966605.1 mRNA upstream 131553 18900272 ~ 18927013 (-) True LOC110508176
TU2416653 other downstream 25967 18741918 ~ 18742284 (-) True G2113287
TU2416574 other downstream 108523 18657553 ~ 18659728 (-) True G2113211
TU2416270 other downstream 268285 18499541 ~ 18499966 (-) True G2112922
TU2416252 other downstream 306713 18461174 ~ 18461538 (-) True G2112905
TU2414937 other downstream 1510856 17256208 ~ 17257395 (-) True LOC110508646
TU2416687 other upstream 16178 18784897 ~ 18785322 (-) True G2113320
TU2416848 other upstream 189325 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other upstream 189391 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other upstream 189391 18958110 ~ 18959832 (-) True LOC118944847
TU2416904 other upstream 238513 19007232 ~ 19009665 (-) False G2113520

Expression Profile