RNA id: TU2416687


Basic Information

Item Value
RNA id TU2416687
length 426
RNA type TUCP
GC content 0.47
exon number 1
gene id G2113320
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18784897 ~ 18785322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTAATGTGTGGGgctgcttctcagccaagggagtgggggctcactcacaattttgcctaagaacacagccatgaataaagaatggtaccaacacatcctccgagagcaacttctcccaaccatccagaaacagtttggtgatgaacaatgccttttccagcatgatggagcaccttgccataaggcaaaagtgataactaagcgGTTCGGGGAACAAAGCATCGATATTttaggtccatggccaggaaactccccagaccttaatcccattgagaacttgtggtcaatcctcaagaagcgggtagacaaacaaaaacccacaaattctgacaaactccaagcattgattatgcaagaatgggctgccatcagtcaggatgtggcccagaagttaattgacagcataccAGGGCGGATTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416686 lncRNA downstream 1430 18783249 ~ 18783467 (-) True G2113319
TU2416684 lncRNA downstream 2481 18782189 ~ 18782416 (-) True G2113317
TU2416680 lncRNA downstream 5401 18779112 ~ 18779496 (-) True G2113313
TU2416679 lncRNA downstream 6682 18777851 ~ 18778215 (-) True G2113312
TU2416678 lncRNA downstream 7858 18776720 ~ 18777039 (-) True G2113311
TU2416688 lncRNA upstream 1083 18786405 ~ 18786687 (-) True G2113321
TU2416689 lncRNA upstream 1755 18787077 ~ 18787543 (-) True G2113322
TU2416693 lncRNA upstream 8044 18793366 ~ 18793624 (-) True G2113326
TU2416695 lncRNA upstream 10100 18795422 ~ 18795630 (-) True G2113328
TU2416696 lncRNA upstream 10597 18795919 ~ 18796128 (-) True G2113329
XM_021589368.2 mRNA downstream 267700 18484345 ~ 18517197 (-) True LOC110508666
XM_036967039.1 mRNA downstream 303564 18428824 ~ 18481333 (-) False LOC110508665
XM_021589379.2 mRNA upstream 52991 18838313 ~ 18849108 (-) False LOC110508670
XM_021589378.2 mRNA upstream 52991 18838313 ~ 18849139 (-) True LOC110508670
XM_021589380.2 mRNA upstream 79517 18864839 ~ 18879323 (-) True LOC110508671
XM_036966604.1 mRNA upstream 95368 18880690 ~ 18927009 (-) False LOC110508176
XM_036966605.1 mRNA upstream 114950 18900272 ~ 18927013 (-) True LOC110508176
TU2416653 other downstream 42613 18741918 ~ 18742284 (-) True G2113287
TU2416574 other downstream 125169 18657553 ~ 18659728 (-) True G2113211
TU2416270 other downstream 284931 18499541 ~ 18499966 (-) True G2112922
TU2416252 other downstream 323359 18461174 ~ 18461538 (-) True G2112905
TU2414937 other downstream 1527502 17256208 ~ 17257395 (-) True LOC110508646
TU2416848 other upstream 172722 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other upstream 172788 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other upstream 172788 18958110 ~ 18959832 (-) True LOC118944847
TU2416904 other upstream 221910 19007232 ~ 19009665 (-) False G2113520
TU2416913 other upstream 221910 19007232 ~ 19008497 (-) False G2113520

Expression Profile