Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055612 |
| length | 2553 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 17 |
| gene id | XLOC_028684 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 16763705 ~ 16824556 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0072329 | monocarboxylic acid catabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0009056 | catabolic process | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0000387 | spliceosomal snRNP assembly | biological_process |
| GO:1901575 | organic substance catabolic process | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0044248 | cellular catabolic process | biological_process |
| GO:0046395 | carboxylic acid catabolic process | biological_process |
| GO:0044282 | small molecule catabolic process | biological_process |
| GO:0022008 | neurogenesis | biological_process |
| GO:0016054 | organic acid catabolic process | biological_process |
| GO:0071013 | catalytic step 2 spliceosome | cellular_component |
| GO:0030532 | small nuclear ribonucleoprotein complex | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005682 | U5 snRNP | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| GO:0005686 | U2 snRNP | cellular_component |
| GO:0097525 | spliceosomal snRNP complex | cellular_component |
| GO:0071949 | FAD binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030826-31 | Predicted to enable glycogen (starch) synthase activity. Predicted to be involved in glycogen biosynthetic process and response to glucose. Predicted to be located in cortical actin cytoskeleton; cytosol; and ectoplasm. Predicted to be active in cytoplasm. Is expressed in liver and male organism. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human GYS2 (glycogen synthase 2). |
| ensembl_id | ENSDART00000185839 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058180 | lncRNA | downstream | 1902 | 16773010 ~ 16786750 (-) | False | XLOC_028684 |
| TCONS_00058181 | lncRNA | downstream | 4218 | 16779023 ~ 16784434 (-) | False | XLOC_028684 |
| TCONS_00058179 | lncRNA | downstream | 10778 | 16773010 ~ 16777874 (-) | False | XLOC_028684 |
| TCONS_00058177 | lncRNA | downstream | 10963 | 16763705 ~ 16777689 (-) | False | XLOC_028684 |
| TCONS_00058178 | lncRNA | downstream | 11005 | 16773010 ~ 16777647 (-) | False | XLOC_028684 |
| TCONS_00057347 | lncRNA | upstream | 288823 | 17113379 ~ 17216173 (-) | False | XLOC_028690 |
| TCONS_00055626 | lncRNA | upstream | 341088 | 17165644 ~ 17182108 (-) | False | XLOC_028690 |
| TCONS_00055627 | lncRNA | upstream | 356889 | 17181445 ~ 17216198 (-) | False | XLOC_028690 |
| TCONS_00057348 | lncRNA | upstream | 357028 | 17181584 ~ 17216173 (-) | False | XLOC_028690 |
| TCONS_00058182 | lncRNA | upstream | 382571 | 17207127 ~ 17216223 (-) | True | XLOC_028690 |
| TCONS_00055607 | mRNA | downstream | 81674 | 16649542 ~ 16706978 (-) | False | XLOC_028683 |
| TCONS_00055610 | mRNA | downstream | 81674 | 16680460 ~ 16706978 (-) | True | XLOC_028683 |
| TCONS_00055606 | mRNA | downstream | 81711 | 16649542 ~ 16706941 (-) | False | XLOC_028683 |
| TCONS_00055614 | mRNA | upstream | 4196 | 16828752 ~ 16833518 (-) | False | XLOC_028685 |
| TCONS_00055615 | mRNA | upstream | 4548 | 16829104 ~ 16836006 (-) | True | XLOC_028685 |
| TCONS_00055616 | mRNA | upstream | 20417 | 16844973 ~ 16853464 (-) | False | XLOC_028686 |
| TCONS_00055617 | mRNA | upstream | 20417 | 16844973 ~ 16853474 (-) | True | XLOC_028686 |
| TCONS_00055620 | mRNA | upstream | 33166 | 16857722 ~ 16876281 (-) | False | XLOC_028687 |
| TCONS_00055587 | other | downstream | 575112 | 16213424 ~ 16213540 (-) | True | XLOC_028672 |
| TCONS_00055582 | other | downstream | 780485 | 16003900 ~ 16008167 (-) | False | XLOC_028666 |
| TCONS_00055578 | other | downstream | 1028979 | 15757435 ~ 15759673 (-) | False | XLOC_028663 |
| TCONS_00055559 | other | downstream | 2043961 | 14744576 ~ 14744691 (-) | True | XLOC_028647 |
| TCONS_00055550 | other | downstream | 2343877 | 14437242 ~ 14444775 (-) | True | XLOC_028642 |
| TCONS_00055632 | other | upstream | 432804 | 17257360 ~ 17260959 (-) | False | XLOC_028692 |
| TCONS_00055646 | other | upstream | 902830 | 17727386 ~ 17740785 (-) | False | XLOC_028701 |
| TCONS_00055647 | other | upstream | 911887 | 17736443 ~ 17737812 (-) | True | XLOC_028702 |
| TCONS_00055657 | other | upstream | 1091376 | 17915932 ~ 17949318 (-) | False | XLOC_028708 |
| TCONS_00055658 | other | upstream | 1174961 | 17999517 ~ 18038547 (-) | False | XLOC_028708 |
