RNA id: TU2416693



Basic Information


Item Value
RNA id TU2416693
length 259
lncRNA type intronic
GC content 0.38
exon number 1
gene id G2113326
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18793366 ~ 18793624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaccagatagccagggtcacacaccaacagtcagacataatttacaaacgaagcatttgtgtttagtaagtccgccagatcagaggcagtagggatgacaagggatgttctcttgataagtgtgtgaattggaccattttcctgtcaaaatgtaacgagtagtTTTGGGTgtgagggaaaatgtatggagtaaaaagtacattattttctttaggaatgtagagaAGAAAGTAGGCAAAGATAATAAAGTAAACTACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2416689 lncRNA downstream 5823 18787077 ~ 18787543 (-) True G2113322
TU2416688 lncRNA downstream 6679 18786405 ~ 18786687 (-) True G2113321
TU2416686 lncRNA downstream 9899 18783249 ~ 18783467 (-) True G2113319
TU2416684 lncRNA downstream 10950 18782189 ~ 18782416 (-) True G2113317
TU2416680 lncRNA downstream 13870 18779112 ~ 18779496 (-) True G2113313
TU2416695 lncRNA upstream 1798 18795422 ~ 18795630 (-) True G2113328
TU2416696 lncRNA upstream 2295 18795919 ~ 18796128 (-) True G2113329
TU2416698 lncRNA upstream 3984 18797608 ~ 18797839 (-) True G2113331
TU2416705 lncRNA upstream 10914 18804538 ~ 18804768 (-) True G2113338
TU2416708 lncRNA upstream 13393 18807017 ~ 18807332 (-) True G2113341
XM_021589368.2 mRNA downstream 276169 18484345 ~ 18517197 (-) True LOC110508666
XM_036967039.1 mRNA downstream 312033 18428824 ~ 18481333 (-) False LOC110508665
XM_021589379.2 mRNA upstream 44689 18838313 ~ 18849108 (-) False LOC110508670
XM_021589378.2 mRNA upstream 44689 18838313 ~ 18849139 (-) True LOC110508670
XM_021589380.2 mRNA upstream 71215 18864839 ~ 18879323 (-) True LOC110508671
XM_036966604.1 mRNA upstream 87066 18880690 ~ 18927009 (-) False LOC110508176
XM_036966605.1 mRNA upstream 106648 18900272 ~ 18927013 (-) True LOC110508176
TU2416687 other downstream 8044 18784897 ~ 18785322 (-) True G2113320
TU2416653 other downstream 51082 18741918 ~ 18742284 (-) True G2113287
TU2416574 other downstream 133638 18657553 ~ 18659728 (-) True G2113211
TU2416270 other downstream 293400 18499541 ~ 18499966 (-) True G2112922
TU2416252 other downstream 331828 18461174 ~ 18461538 (-) True G2112905
TU2416848 other upstream 164420 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other upstream 164486 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other upstream 164486 18958110 ~ 18959832 (-) True LOC118944847
TU2416904 other upstream 213608 19007232 ~ 19009665 (-) False G2113520
TU2416913 other upstream 213608 19007232 ~ 19008497 (-) False G2113520

Expression Profile