RNA id: TU2416708



Basic Information


Item Value
RNA id TU2416708
length 316
lncRNA type intronic
GC content 0.39
exon number 1
gene id G2113341
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18807017 ~ 18807332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgCAAATATAAtcaaaaatcgaatcaaacacttcatgagagcccatgagctcatgttgcgcaacatatctataggctatgcaattgcatgaGAAAATAGAGTTGAAGAGGaagatcccatcagctttctataggctaggcctactatatttatttctcaacttccctaatattaagcacattgcttatctttacaacaggagtatagcctacctggctggcatgaaaataagcCACGGGAAAAACAGgctccattcactatttaagtaCATAGAggacatgttttgtttttttgcctcTGTTCTGAGACAGGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2416705 lncRNA downstream 2249 18804538 ~ 18804768 (-) True G2113338
TU2416698 lncRNA downstream 9178 18797608 ~ 18797839 (-) True G2113331
TU2416696 lncRNA downstream 10889 18795919 ~ 18796128 (-) True G2113329
TU2416695 lncRNA downstream 11387 18795422 ~ 18795630 (-) True G2113328
TU2416693 lncRNA downstream 13393 18793366 ~ 18793624 (-) True G2113326
TU2416709 lncRNA upstream 167 18807499 ~ 18807750 (-) True G2113342
TU2416790 lncRNA upstream 123172 18930504 ~ 18930906 (-) True G2113416
TU2416792 lncRNA upstream 124958 18932290 ~ 18932513 (-) True G2113418
TU2416800 lncRNA upstream 128572 18935904 ~ 18936124 (-) True G2113424
TU2416837 lncRNA upstream 133481 18940813 ~ 18941246 (-) True G2113461
XM_021589368.2 mRNA downstream 289820 18484345 ~ 18517197 (-) True LOC110508666
XM_036967039.1 mRNA downstream 325684 18428824 ~ 18481333 (-) False LOC110508665
XM_021589379.2 mRNA upstream 30981 18838313 ~ 18849108 (-) False LOC110508670
XM_021589378.2 mRNA upstream 30981 18838313 ~ 18849139 (-) True LOC110508670
XM_021589380.2 mRNA upstream 57507 18864839 ~ 18879323 (-) True LOC110508671
XM_036966604.1 mRNA upstream 73358 18880690 ~ 18927009 (-) False LOC110508176
XM_036966605.1 mRNA upstream 92940 18900272 ~ 18927013 (-) True LOC110508176
TU2416687 other downstream 21695 18784897 ~ 18785322 (-) True G2113320
TU2416653 other downstream 64733 18741918 ~ 18742284 (-) True G2113287
TU2416574 other downstream 147289 18657553 ~ 18659728 (-) True G2113211
TU2416270 other downstream 307051 18499541 ~ 18499966 (-) True G2112922
TU2416252 other downstream 345479 18461174 ~ 18461538 (-) True G2112905
TU2416848 other upstream 150712 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other upstream 150778 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other upstream 150778 18958110 ~ 18959832 (-) True LOC118944847
TU2416904 other upstream 199900 19007232 ~ 19009665 (-) False G2113520
TU2416913 other upstream 199900 19007232 ~ 19008497 (-) False G2113520

Expression Profile